Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01330 ATGAAGTTTTTTTCTCTCACATTGCTTCAATTTTGGTCTATACTCATTCATCTTTTCTCTCTCTTCATATTGAAATCACTATGGTTTACTCCAAACATCACTGTCTTTGCATTAGGAAATGAAACCGATCATTTCGCATTGCTGAAATTCAAGGAATCCATATCCAATGATCCAAATAGAATCTTGTTTTCATGGAATACTTCTACACACTTCTGTAACTGGCATGGAATCACGTGCAATTCTATGCTTCAAAGAGTTACAAAGTTGAATTTGGGAGGATACAAGTTGAAAGGATTCATATCTCCTCACATAGGCAATCTATCTCACATGACAACTTTCAACATTGAAAACAACAACTTCTACGGAGAAATCCCTGAAGAAATAGGTAAGTTGTCAAAACTCCAATACCTTTCTGTTGCAAATAACTCATTGTTGGAAGGAAAATTTCCTTCAAACCTTACCTCTTGCACGGACCTCAAAATATTGTTCCTAAACGGTAACAACTTGACTGGTAAAATACCAGTCGAAATTGTCTCACTTCAGAAACTTCAACAATTGTACCTTTACAAGAACAATTTATCTGGAACAATCCCATCCTTCATGGGGAATCTTTCATCGTTAACCCATCTCTCTTTAGGTTCTAACAACTTTAATGGAAACATTCCACAAGAAATTTGTCGTCTCAAACGTTTGACATTTCTATCATTAGCTATCAACAAATTGACCGGAGCATTTCCTTCTTGTCTTTATAATATGTCATCTCTTACTATAATCTCAGTGGCCCTAAATCAACTTAACGGCTCTTTGCCATCCAACATGTTCCACACCCTCTCCAATCTCCAAGAACTTCAAATTGGTCTGAATCAATTCTCAGGACCAATCCCATCTTCCATAACAAATGCATCCATCCTTTCAACACTTAATATGGTTGATAACAATTTTTATGGCCATGTTCCAAGTATGGGGAAGGAAATACATCTTAAATATCTAAGCTTAGATAGAAACAATCTAGGTGACAATTCACCAAATGATTTGGAGTTTTTAAAATCATTGACAAACTGTAGTGAGTTACAAGTGTTGTCTTTGGATTACAATAATTTTGGAGGCCGTTTGCCAAATTCTTTGGGCAATTTATCCACCCAACTTAGTGAATTTTTTCTCGGGGGCAATCAAATATCAGGAGATATTCCAGCCTCATGTGGAGATCTAATTGGCTTAACTCTCTTCACAATCGAACAAAACTTCATTGATGGAATTATTCCAACAACTTTTGCGAAGCTACAGAAGTTGCAAGTGTTGGACTTAAGAGGAAACAAATTGTCAAGCTTAGGAACCTTCATAGGCAATCTCAGTGGACTGTATTATTTAGACGTCGCAGAAAACATGTTAGAAGGAAGTATTCCTCCAAGTCTAGGAAATTGCCAAGATTTGCAACATTTAGACCTTTCCTATAACAACCTCACGGGAACCATACCATCGCAGGTTTTTAATCTTTCATCTCTAGCTGATGGATTCTCATTGGCACAAAACTTGTTGAGTGGTGCTATACCAAAAGAAGTGGGCAACCTCAAAAATCTCAACTTGCTATATTTGTTAGAGAATCGTCTGTCTGGTCACATTCCAGAAACTATTGGAGAATGCATAATGTTGGAAAATCTCTATTTGCAAGGGAATTCTTTACAAGGAAACATCCCTTCTTCTTTGGCATCACTCAAAGGTCTTCAAAGGTTAGATCTCTCACGAAACCTCTTGTCTGGATCAATTCCTAGTGTTCTGCAGAGCATTTCTTTGTTACAATATTTCAATATATCATTTAACATGTTGGATGGTGAGGTACCAACTAAAGGCATATTTAGTAATGCAAGTGGGATAATTGTGACTGGAAATAGTAAGCTTTGTGGAGGTATTTCAAAGCTGCATCTACCATTATGTCCTGTCAAAGCCACCAAAAAAGAAAAGCATCACTCACTCCGATTAATAGCAATTATAGTAAGTGTAGTTGCTTCTCTTCTCATATTGTTGGTTATTCTAACAATCTACTGGATGAGGAAAAGGAGTAATAAACCATCTTTGGATTCACCCACAATAGACCAACTGCCTAAAGTTTCATACCAAAGCCTATACAATGGAACAAATGGGTTCTCAACTTCAAACTTGATCGGATCTGGAAGCTTTAGCTCTGTATACAAAGGAACTCTTGAGCAAGAAGACAAGATTGTTGCCATAAAGGTCCTAAACCTTCAAAAGAAAGGAGCTGACAAAAGTTTCATTGTTGAATGCAATGCACTTAAAAATATTAGACACAGAAATCTGGTTCCGACTTTGACTTGTTGCTCTAGCACAGATTACAAAGGTCAAGAATTCAAAGCTATAATTTTTGAGTATATGACAAATGGAAGCTTAGAACAGTGGATTCATCCTGGTCCACCAAGTGCACGACACATGAGAAGATTGAGCCTTCATCAACGATTAAACATCACAATTGATGTTGCTTCTGCATTGCATTATCTGCACCACGAGTGTGAACAATTGATCATTCACTGTGATATAAAACCAAGCAATGTTCTTCTTAATGATAGCATGGTTGCACATGTGGGTGATTTTGGTATAGCAAGACTTTTGTCAACTTTCAATCACACCACTTCTGGGCAAACAAGTACAAATGGAATAAAGGGTACAGTTGGCTATGCTCCTCCAGAGTATGGAGAGAGGTACAAGGTGTCAACTTACGGTGACGTGTATAGTTTTGGAATTCTTATATTGGAAATGCTTACCGGAAGAAGACCTACAGATGAAATGTTTAAAGATGGTCAAAATCTTCGTAACTTCGTTGCAGTTTCAATTCCTAATAATGTTTTGCAGATTTTGGATCCAAGAATAATTTCAGAGTATGAAGCAACTGCAGTGGAGGAAAACTGTTGTAATCTTAATGCAGAGGCTGAAAAGTGTGTAGTTTCGCTTTTTAGAATTGGACTTGCTTGCTCTGTGGAATCACCAAGAGAAAGAATGAATTTGGTTGACGTTATCAGAGAGCTTAATCAAATCACCAAGGTTTCTTCTTTACTGGGGATGACTACTGAGTAG 3084 0.3716 MKFFSLTLLQFWSILIHLFSLFILKSLWFTPNITVFALGNETDHFALLKFKESISNDPNRILFSWNTSTHFCNWHGITCNSMLQRVTKLNLGGYKLKGFISPHIGNLSHMTTFNIENNNFYGEIPEEIGKLSKLQYLSVANNSLLEGKFPSNLTSCTDLKILFLNGNNLTGKIPVEIVSLQKLQQLYLYKNNLSGTIPSFMGNLSSLTHLSLGSNNFNGNIPQEICRLKRLTFLSLAINKLTGAFPSCLYNMSSLTIISVALNQLNGSLPSNMFHTLSNLQELQIGLNQFSGPIPSSITNASILSTLNMVDNNFYGHVPSMGKEIHLKYLSLDRNNLGDNSPNDLEFLKSLTNCSELQVLSLDYNNFGGRLPNSLGNLSTQLSEFFLGGNQISGDIPASCGDLIGLTLFTIEQNFIDGIIPTTFAKLQKLQVLDLRGNKLSSLGTFIGNLSGLYYLDVAENMLEGSIPPSLGNCQDLQHLDLSYNNLTGTIPSQVFNLSSLADGFSLAQNLLSGAIPKEVGNLKNLNLLYLLENRLSGHIPETIGECIMLENLYLQGNSLQGNIPSSLASLKGLQRLDLSRNLLSGSIPSVLQSISLLQYFNISFNMLDGEVPTKGIFSNASGIIVTGNSKLCGGISKLHLPLCPVKATKKEKHHSLRLIAIIVSVVASLLILLVILTIYWMRKRSNKPSLDSPTIDQLPKVSYQSLYNGTNGFSTSNLIGSGSFSSVYKGTLEQEDKIVAIKVLNLQKKGADKSFIVECNALKNIRHRNLVPTLTCCSSTDYKGQEFKAIIFEYMTNGSLEQWIHPGPPSARHMRRLSLHQRLNITIDVASALHYLHHECEQLIIHCDIKPSNVLLNDSMVAHVGDFGIARLLSTFNHTTSGQTSTNGIKGTVGYAPPEYGERYKVSTYGDVYSFGILILEMLTGRRPTDEMFKDGQNLRNFVAVSIPNNVLQILDPRIISEYEATAVEENCCNLNAEAEKCVVSLFRIGLACSVESPRERMNLVDVIRELNQITKVSSLLGMTTE 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01330 1027 Pfam Leucine rich repeat 550 608 IPR001611 GO:0005515
Viun2g01330 1027 Pfam Leucine rich repeat 406 463 IPR001611 GO:0005515
Viun2g01330 1027 Gene3D Transferase(Phosphotransferase) domain 1 796 1022 - -
Viun2g01330 1027 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 40 199 - -
Viun2g01330 1027 SMART LRR_sd22_2 131 147 - -
Viun2g01330 1027 SMART LRR_sd22_2 180 206 - -
Viun2g01330 1027 SMART LRR_sd22_2 474 500 - -
Viun2g01330 1027 SMART LRR_sd22_2 228 254 - -
Viun2g01330 1027 SMART LRR_sd22_2 427 452 - -
Viun2g01330 1027 SMART LRR_sd22_2 571 597 - -
Viun2g01330 1027 SMART LRR_typ_2 523 547 IPR003591 -
Viun2g01330 1027 SMART LRR_typ_2 131 156 IPR003591 -
Viun2g01330 1027 SMART LRR_typ_2 427 448 IPR003591 -
Viun2g01330 1027 SMART LRR_typ_2 252 276 IPR003591 -
Viun2g01330 1027 SMART LRR_typ_2 180 202 IPR003591 -
Viun2g01330 1027 SMART LRR_typ_2 204 228 IPR003591 -
Viun2g01330 1027 SMART LRR_typ_2 450 474 IPR003591 -
Viun2g01330 1027 SMART LRR_typ_2 571 594 IPR003591 -
Viun2g01330 1027 SMART LRR_typ_2 475 498 IPR003591 -
Viun2g01330 1027 SUPERFAMILY L domain-like 380 634 - -
Viun2g01330 1027 PANTHER OS04G0122200 PROTEIN 227 1016 - -
Viun2g01330 1027 Pfam Leucine rich repeat N-terminal domain 41 80 IPR013210 -
Viun2g01330 1027 SMART serkin_6 714 988 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01330 1027 FunFam LRR receptor-like serine/threonine-protein kinase EFR 343 650 - -
Viun2g01330 1027 Pfam Protein kinase domain 716 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01330 1027 Gene3D Ribonuclease Inhibitor 39 323 IPR032675 -
Viun2g01330 1027 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 796 1022 - -
Viun2g01330 1027 Gene3D Ribonuclease Inhibitor 324 654 IPR032675 -
Viun2g01330 1027 SUPERFAMILY L domain-like 40 337 - -
Viun2g01330 1027 SUPERFAMILY Protein kinase-like (PK-like) 687 1012 IPR011009 -
Viun2g01330 1027 PRINTS Leucine-rich repeat signature 571 584 - -
Viun2g01330 1027 PRINTS Leucine-rich repeat signature 477 490 - -
Viun2g01330 1027 ProSiteProfiles Leucine-rich repeat profile. 429 450 IPR001611 GO:0005515
Viun2g01330 1027 FunFam LRR receptor-like serine/threonine-protein kinase EFR 685 795 - -
Viun2g01330 1027 ProSitePatterns Protein kinases ATP-binding region signature. 720 743 IPR017441 GO:0005524
Viun2g01330 1027 ProSitePatterns Serine/Threonine protein kinases active-site signature. 845 857 IPR008271 GO:0004672|GO:0006468
Viun2g01330 1027 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 203 272 - -
Viun2g01330 1027 Gene3D Phosphorylase Kinase; domain 1 695 795 - -
Viun2g01330 1027 ProSiteProfiles Protein kinase domain profile. 714 1022 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01330 1027 Pfam Leucine Rich Repeat 477 493 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01330 Viun-Chr2 23885605 23889269 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01330 40 1017 Receptor kinase-like Gene Family AT3G47570 45.051 0.0 818
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Viun2g01330 Pkinase 1.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01330 - - gmx:100801459 1376.69