Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01300 ATGGAATTCGAAGATCAAGAGGACCAAGAGGAGGAGCAGTGTATGGGTGCCGCAGCTTACGACCCCGCACGGATGAAGGTTCCGGTCGGTCCGGAGGCAGTCATGGCGGCGCAGCCGGTGAGAAGCAGCACCAACGGAGGCGCAGGGAGGGCGCGCTACAGGGAGTGTCTGAAGAACCACGCCGTCGGCATCGGCGGCCACGCGCTCGACGGCTGCGGCGAGTTCCTGGCGGCAGGGACGGAGGGTTCCCTCGACGCGCTGAAATGTGCAGCCTGCAGCTGCCACCGCAACTTTCACCGCAAGGAGAGCGATGGGGCCGGGGCCTCCGTCGGCGGTGGCGACCCCTACTTGGTTTCGCACCACCACCTGCACCATCCTCCGCCGCCTCAGTTCGCGGCCTACTACAGGACCCCGACTGGGTACCTTCAGGTGGGGGGGCAGGCGCGCGTGGCTGGGACGCTGGCGCTGCCGTCGACGTCCGGCGGCGGTGGGACGCAGAGCACTCGGGAGGACCAGGAGGACGTTTCGAACCCGAGTGCAGGAGGAACGGGGTCCAAGAAACGGTTCAGAACAAAGTTCACGCAGGAGCAAAAGGACAAAATGCTTGAACTTGCTGAAAAATTAGGGTGGAGGATTCAGAAACACGACGAGGGTGTGGTCCAAGCCTTCTGCAACGAAACTGGGGTGAAGCGTCACGTTCTCAAGGTTTGGATGCATAACAACAAGCACACTCTCGGTAAGAAGCCCTAG 750 0.6253 MEFEDQEDQEEEQCMGAAAYDPARMKVPVGPEAVMAAQPVRSSTNGGAGRARYRECLKNHAVGIGGHALDGCGEFLAAGTEGSLDALKCAACSCHRNFHRKESDGAGASVGGGDPYLVSHHHLHHPPPPQFAAYYRTPTGYLQVGGQARVAGTLALPSTSGGGGTQSTREDQEDVSNPSAGGTGSKKRFRTKFTQEQKDKMLELAEKLGWRIQKHDEGVVQAFCNETGVKRHVLKVWMHNNKHTLGKKP 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01300 249 FunFam Zinc-finger homeodomain protein 2 172 247 - -
Viun2g01300 249 MobiDBLite consensus disorder prediction 154 189 - -
Viun2g01300 249 Pfam ZF-HD protein dimerisation region 51 103 IPR006456 -
Viun2g01300 249 SUPERFAMILY Homeodomain-like 174 247 IPR009057 -
Viun2g01300 249 MobiDBLite consensus disorder prediction 158 184 - -
Viun2g01300 249 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 52 102 IPR006456 -
Viun2g01300 249 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 53 102 IPR006456 -
Viun2g01300 249 Gene3D - 170 247 - -
Viun2g01300 249 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 44 245 - -
Viun2g01300 249 NCBIfam homeobox domain, ZF-HD class 186 242 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01300 Viun-Chr2 23616603 23617774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01300 49 245 ZF-HD Transcription Factor Family AT4G24660 53.299 1.01e-65 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Viun2g01300 ZF-HD_dimer 3.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01300 - - gmx:100808910 382.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01300 2 23616603 23617774 Viun3g03189 3 38434479 38435804 PCT