Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01295 ATGGAAGAAGCAATGAGGCGTCTCAACGGTGTGACTCCGATTCTCGGACCCGACCCAAAAGAGTCATCAGTCGGTGAAAACCCTAAACGCTCCACCGCCGTCAACAAGCGCGCTTTAAGGGAAGACGGCGGCGGCGGAGCCATGAGGTACCGTGGCGTGAGGCGCAGGCCGTGGGGACGTTACGCCGCCGAGATTAGGGACCCTCAGTCCAAGGAGCGACGGTGGCTGGGAACCTTCGACACCGCGGAGGAAGCCGCCTGCGCCTACGACTGCGCCGCCAGAGCCATGCGCGGTCTCAAGGCTCGCACCAACTTCGTGTACCCCACTTCTCCGCAAGCTTCTTCCGCCACCGCCGAGCACTTCTTTCATTCTTTTAGTAATAACAACTTCACCAAACACTCTCCGTCACTACCCTTCACCAGCCACCGTAGCCGCCACTCAACTGGTTCCGCCAGCTGCTTTGACCACCCTAGCCCCGTTGACTTTTCCTTTTCCAACCCGCGAAACCCTTCTTCCTCACTCAACATGCTTCTCCTTCGCGACCTCATTAACTCTTCTTCAAATAACCCCTCCTTGCTTTCTTCTTCCACCCACAACTTCCACGACCAGTTCTACAACAAGGGTTCTTCTACTTTTTCATCGTTACCAACTGTTTCTTCTTCTTCTTCTTCTTCACCTCTTATTCCTAGTTATTCGGTGAATTACCCTTTGGAAGGCACTGCGTCTGTTAACGTGAACACCCTATGTGGAACTAATTTCACCGAAAAAGGTGATGATGACAGTGGGTCTGGATTTTTCTCTCGAGAATCTTCGGATTCGGGATTGTTGGAAGAGATAGTTAACAAGTTCTTGCCCAAAGCGAAGCCTAATAAATGCGAGACTTTGCCAAAAATAGAGAGTTTCCGAAACCCTCAGGAGTCCGTTCTTCCTTCACTTATTTCTGAATCAACACTTGTTTCCACCGCGCAATGCTATGATGACACGAAGAAGGGGTTTCAGAAGAATGAGAGTTTCGGTGTTTCTTTCGATCATCAGGGTCTTCCCATGCAGAAATTTGACAACTTTAATGGGTTTAACGTGCAGGGTATGGCTCTGGGGAATGAACAAACCATGACCAATCATGCAGAGAATTGCATCGTTGAAGATGTTTTTCAGTACCAAGAGCTTCTTAATTCTTTTGCAATCAGGATGCAAAATGCTTAG 1203 0.4963 MEEAMRRLNGVTPILGPDPKESSVGENPKRSTAVNKRALREDGGGGAMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYPTSPQASSATAEHFFHSFSNNNFTKHSPSLPFTSHRSRHSTGSASCFDHPSPVDFSFSNPRNPSSSLNMLLLRDLINSSSNNPSLLSSSTHNFHDQFYNKGSSTFSSLPTVSSSSSSSPLIPSYSVNYPLEGTASVNVNTLCGTNFTEKGDDDSGSGFFSRESSDSGLLEEIVNKFLPKAKPNKCETLPKIESFRNPQESVLPSLISESTLVSTAQCYDDTKKGFQKNESFGVSFDHQGLPMQKFDNFNGFNVQGMALGNEQTMTNHAENCIVEDVFQYQELLNSFAIRMQNA 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01295 400 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Viun2g01295 400 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Viun2g01295 400 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Viun2g01295 400 FunFam Ethylene-responsive transcription factor 2 48 107 - -
Viun2g01295 400 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 31 210 - -
Viun2g01295 400 CDD AP2 49 105 IPR001471 GO:0003700|GO:0006355
Viun2g01295 400 Gene3D AP2/ERF domain 48 107 IPR036955 GO:0003700|GO:0006355
Viun2g01295 400 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Viun2g01295 400 MobiDBLite consensus disorder prediction 1 34 - -
Viun2g01295 400 SUPERFAMILY DNA-binding domain 49 106 IPR016177 GO:0003677
Viun2g01295 400 Pfam AP2 domain 49 98 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01295 Viun-Chr2 23498364 23499788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01295 1 297 AP2-EREBP Transcription Factor Family AT1G24590 36.164 1.05e-41 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Viun2g01295 AP2 3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01295 - - vum:124821082 695.271