Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01288 ATGGTCCACAACAATATACACACTCCTCTCAAGCTCCCACCGTTATCCCAACCCCATCTTCCTCTTCCCACGCTCTTCACCACCATGCCTCTTCTACTCGCTCGCACCCCACCATCTTCACTTCCTCCAATCCTTCGCCACCACTACAACAACAACAACAACCTTCTAATCGCACCCTCTCAGAAGCGCGCCTCTCTCACTGCAGGGCCAATTCTTCTTCCCCGGCGCATTCTAGCATCACCGACTCTCAAGTGCGCCTCCATCAACGGAGTCTCCGTTCATAACACTCCAGAAGCTTCCACAGAACAAGTCTACGCCGGCGAGTTACTTCAGAGGATTCGTAAATGGCTCGACTTTTTACCGTCGATACTTCCCGGCGGGCGGTGGTGGGACTTCTCTCATGACGTCGACGTTCAGCTGGTGGCGCAGCCCGTGACCGTGTGGCGCGCGCTAGGCAAAATGTGGGAGCTTGTCGCGCGTGACAGATGGGTCATCATCGCTGCTTTCTCTGCTCTCATTGTTGCTGCTGTTTCGGAGATTTCTATTCCGCATTTCTTAACGGCGTCCATCTTCTCGGCACAGGGTGCGGACCTTGCTGTTTTTCATCGGAATGTGCGCTTGTTGGTTCTGTTGTGCGTGACTTCGGGAATATGCAGTGGGATACGAGGTTGCTGTTTTGGCATTGCAAACATGATTCTGGTTAAGAGAATGAGAGAAACTCTATACTCTTCTCTTCTACTGCAGGATATATCGTTTTTTGACAATGAAACGGTAGGTGATTTGACAAGTAGGCTTGGGGCTGATTGTCAACAAGTGTCAAGAGTTATTGGAAATGATCTTAACTTGATATTGCGCAACTTTCTTCAGGGTGGAGGTTCATTAATCTACTTGTTGATTTTATCTTGGCCACTTGGTTTATGTACATTGGTGATATGCTCCATATTAGCAGCAGTTATGTTACGCTATGGAAGTTACCAGAAAAAGGCAGCAAGGTTGATCCAAGAAGTCACTGCTTCGGCAAATGATGTAGCTCAAGAGACATTCTCTCTTATTAGAACTGTACGAGTTTATGGAACCGAAGAAGAAGAATATGGAAGGTATAATTGGTGGCTAGAGAAATTAGCTGACATCAGCTTGCGTCAAAGTGCTGCTTATGGAGTTTGGAATTTTAACTTTAACATCCTTTATCATTCAACTCAGGTCATTGCTGTGCTATTTGGAGGAATGTCTATTCTTGCGGGTCATATCACAGCTGAGAAACTTACCAAGTTTATTCTATACAGTGAATGGTTAATCTACTCTACCTGGTGGGTAGGAGACAATATATCCAATTTGATGCAATCAGTTGGAGCTAGTGAAAAAGTATTCCATTTAATGGATCTCTCCCCTAGCAGCCAATTCACGGAAAGAGGTATAAAGTTGCAGAGGTTAATGGGGCGTATTGAGTTTCTAAATGTATCTTTTCACTATCCTTCGAGGCCAACGGTATCTGTAGTGCAACATGTTAGCTTTGCAGTCCATCCTGGTGAGGTGGTTGCAATAGTTGGACTTAGCGGTAGTGGAAAAAGCACATTGGTGAATCTTTTGCTCCGTCTCTATGAGCCTACAAGTGGTCAGATTTTGGTAGATGATACCCCTATTAAAGACTTGGACATCATGTGGTGGAGAGAGAAAATTGGATTTGTGGGCCAGGAACCCAAACTCTTCCGAATGGATATTAGTTCAAACATCAAATATGGATGTAGAGATGTAAAGCATGAGGATATTGAATGGGCTGCAAAGCAAGCCTATGCCCATGACTTTATCTCAGCACTTCCCAATGGTTATGAGACACTTGTTGATGATGATCTGTTAAGTGGAGGACAAAAGCAGCGAATTGCTATTGCTAGGGCCCTTCTTAGGGACCCAAAAATATTGATCCTTGATGAAGCCACCAGTGCACTTGATGCTGAAAGTGAGCATAATGTCAAGGGTGTACTTCGATCTGTGAGAAGTGATTCTGCAACCAGGAGTGTCATAGTCATTGCACACAGGCTTTCTACCATACAAGCAGCTGACAGGATTGTGGTGATGGATGGTGGTCAAATTGTTGAGATTGGAAGTCACAGGGAACTTCTCTTAAGAGATGGTTTGTATGCACGGTTAACTAGGAAACAGGCTGACGCCATGGCATGA 2175 0.4524 MVHNNIHTPLKLPPLSQPHLPLPTLFTTMPLLLARTPPSSLPPILRHHYNNNNNLLIAPSQKRASLTAGPILLPRRILASPTLKCASINGVSVHNTPEASTEQVYAGELLQRIRKWLDFLPSILPGGRWWDFSHDVDVQLVAQPVTVWRALGKMWELVARDRWVIIAAFSALIVAAVSEISIPHFLTASIFSAQGADLAVFHRNVRLLVLLCVTSGICSGIRGCCFGIANMILVKRMRETLYSSLLLQDISFFDNETVGDLTSRLGADCQQVSRVIGNDLNLILRNFLQGGGSLIYLLILSWPLGLCTLVICSILAAVMLRYGSYQKKAARLIQEVTASANDVAQETFSLIRTVRVYGTEEEEYGRYNWWLEKLADISLRQSAAYGVWNFNFNILYHSTQVIAVLFGGMSILAGHITAEKLTKFILYSEWLIYSTWWVGDNISNLMQSVGASEKVFHLMDLSPSSQFTERGIKLQRLMGRIEFLNVSFHYPSRPTVSVVQHVSFAVHPGEVVAIVGLSGSGKSTLVNLLLRLYEPTSGQILVDDTPIKDLDIMWWREKIGFVGQEPKLFRMDISSNIKYGCRDVKHEDIEWAAKQAYAHDFISALPNGYETLVDDDLLSGGQKQRIAIARALLRDPKILILDEATSALDAESEHNVKGVLRSVRSDSATRSVIVIAHRLSTIQAADRIVVMDGGQIVEIGSHRELLLRDGLYARLTRKQADAMA 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01288 724 Gene3D ABC transporter type 1, transmembrane domain 148 468 IPR036640 GO:0005524|GO:0016020
Viun2g01288 724 FunFam ABC transporter B family member 26, chloroplastic 147 466 - -
Viun2g01288 724 Pfam ABC transporter transmembrane region 166 432 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun2g01288 724 PIRSF ABC_prm/ATPase_B 79 724 - -
Viun2g01288 724 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 472 719 IPR027417 -
Viun2g01288 724 CDD ABC_6TM_TAP 168 455 - -
Viun2g01288 724 ProSitePatterns ABC transporters family signature. 618 632 IPR017871 GO:0005524|GO:0016887
Viun2g01288 724 FunFam Multidrug ABC transporter ATP-binding protein 473 723 - -
Viun2g01288 724 Gene3D - 471 723 IPR027417 -
Viun2g01288 724 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 481 718 IPR003439 GO:0005524
Viun2g01288 724 PANTHER ABC TRANSPORTER B FAMILY 160 716 IPR039421 -
Viun2g01288 724 SUPERFAMILY ABC transporter transmembrane region 153 463 IPR036640 GO:0005524|GO:0016020
Viun2g01288 724 SMART AAA_5 508 695 IPR003593 GO:0016887
Viun2g01288 724 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 166 447 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun2g01288 724 Pfam ABC transporter 500 646 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01288 Viun-Chr2 23437618 23444909 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01288 236 722 Calmodulin-binding Proteins AT2G36910 34.200 3.35e-74 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01288 - - vra:106777591 1322.76