Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01276 ATGTCTTCTCTTCTTTCTCTTCTCATTCCTCTTCTTGCTACTTCTTGTGTAAGTGTAGCTGTGTTTTCCTTCCAAGCTTCTCTCAAAACAACTTACTTGGAACCCTTCAGATGCTCCTCTATGATCAGCACATGCAATGCCTCACTCTACCACATAAGTTACAATCACAACGCAGATGACTTAGCCAACTTTTACTCCGTTCATCCCTCCCAAATCAAACCTATAATGCGTGGCACAAAGAAAGATTACCTTGTAACAGTGCCTTGTTCCTGCAATAACACTAATGATGATGACCTTGGCGGATATTTCTATGATACAACCTACAAGGTGAAGCCTAATGACTCTTCTGTGGAGATTAACAACGTTGTTTACAGTGGCCAAGCCTGGTCTATTAACACAGAAGTGGACCCAAATGAGGACTTGGCAATACATCTTCCTTGTGGGTGTTCAAAAAAAAGTGACTCCCAAATTGTTGTCACGTATACAGTTCAGCGGAATGATACACCCATATCAATCGCTACACTGCTAAATGCTACCTTAGATGACATGGTGAGTATGAACGAAGTTCTGGTTCAGAACCCTTCATTCATAGATATTAATTGGGTGCTGTATGTTCCAAGGGAACTCAATGGTTTGCCTTCCAAAGGAAAAGAGAAGAAACACTATATAATCATTGGCATCTTAGCGGGTGTGACATTCTTTTCAACTATTACTTTGATCATTCTCGTTGTCGTTCTTAGGAGATCCAGGGCCAGTGTAGCCGCAAAAAATGATCCAAATATAGTGTCTAAAAGATCAATTGGAAATAGAACTATTTCCATAAAGAACCGAGATTTTCATGCAGAACATATAGAAGGCTTATTCATGTTAAATATGGCCGAAGATGCAACTCCATTTGAATCAGAAAGACCAGTAATTTATGCTCTAGAGGAGATTGAAGATGCTACGAATAACTTCGACGAAACACGAAAGATTGGAGTAGGTGGATACGGGAGTGTGTATTTCGGAATGTTAGAGGAGAAGGAGGTTGCTGTAAAGAAGATGAGGTCTAATAAATCCAAAGAATTCTATGCAGAACTCAAGGCCTTGTGTAAGATCCATCACATTAACATTGTGGAGTTGTTGGGATATGCCAGCGGAGATGACCACCTTTATTTGGTGTACGAGTATGTTCCAAATGGATCTCTCAGTAAGCACCTTCATGATCCATTACTGAAAGGTCACCAGCCTCTTTCTTGGTGTGCTAGGGTTCAAATTGCATTGGATGCAGCAAAAGGTCTTGAATATATACATGATTACACGAAAGCTCGATATGTGCATCGTGATATAAAGACTTGCAATATTCTCCTTGATGAGAAGCTTAGAGCAAAGGTAGCAGATTTTGGACTTGCAAAGCTGGTAGAACGAACCAATGATGAAGAATTCATAGCCACAAGGCTTGTTGGAACACCGGGCTACCTTCCACCAGAATCTGTTAAGGAGCTTCAAGTGACTATAAAAACAGATGTATTTGCATTTGGGGTGGTTCTGTCAGAGTTGATAACAGGAAAACGTGCACTATTTCGTGACAACCAACAACCCAACAATATGAAATCACTTGTTACAGTTGTTAGCCAAATCTTCAAAAACAAATACCCAGAGAATGTTTTAGCAGATGCCATAGATGGGAATCTTCAGCATAGCTATCCAATGGAAGATGTCTACAGGATGGCAGAAGTAGCTCATTGGTGTTTGTGCGAAGATCCAAACGACAGGCCTGTGATGAGGGAGATAGTTGTGGCATTGTCTCAGATTGTTATGTCATCCACAGAATGGGAAGCATCATTAGGTGGAGACAGCCAAGTCTTCAGTGGGGTTCTTGATGGAAGATGA 1872 0.4087 MSSLLSLLIPLLATSCVSVAVFSFQASLKTTYLEPFRCSSMISTCNASLYHISYNHNADDLANFYSVHPSQIKPIMRGTKKDYLVTVPCSCNNTNDDDLGGYFYDTTYKVKPNDSSVEINNVVYSGQAWSINTEVDPNEDLAIHLPCGCSKKSDSQIVVTYTVQRNDTPISIATLLNATLDDMVSMNEVLVQNPSFIDINWVLYVPRELNGLPSKGKEKKHYIIIGILAGVTFFSTITLIILVVVLRRSRASVAAKNDPNIVSKRSIGNRTISIKNRDFHAEHIEGLFMLNMAEDATPFESERPVIYALEEIEDATNNFDETRKIGVGGYGSVYFGMLEEKEVAVKKMRSNKSKEFYAELKALCKIHHINIVELLGYASGDDHLYLVYEYVPNGSLSKHLHDPLLKGHQPLSWCARVQIALDAAKGLEYIHDYTKARYVHRDIKTCNILLDEKLRAKVADFGLAKLVERTNDEEFIATRLVGTPGYLPPESVKELQVTIKTDVFAFGVVLSELITGKRALFRDNQQPNNMKSLVTVVSQIFKNKYPENVLADAIDGNLQHSYPMEDVYRMAEVAHWCLCEDPNDRPVMREIVVALSQIVMSSTEWEASLGGDSQVFSGVLDGR 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01276 623 Pfam Protein kinase domain 320 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01276 623 FunFam Kinase family protein 293 390 - -
Viun2g01276 623 ProSitePatterns Protein kinases ATP-binding region signature. 325 347 IPR017441 GO:0005524
Viun2g01276 623 ProSiteProfiles Protein kinase domain profile. 319 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01276 623 SUPERFAMILY Protein kinase-like (PK-like) 302 595 IPR011009 -
Viun2g01276 623 SUPERFAMILY LysM domain 159 206 IPR036779 -
Viun2g01276 623 Gene3D Transferase(Phosphotransferase) domain 1 391 612 - -
Viun2g01276 623 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 37 617 IPR044812 GO:0019199|GO:0045087
Viun2g01276 623 FunFam PTI1-like tyrosine-protein kinase 3 391 609 - -
Viun2g01276 623 Gene3D LysM domain 151 211 IPR036779 -
Viun2g01276 623 CDD LysM 159 205 IPR018392 -
Viun2g01276 623 SMART serkin_6 319 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01276 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 438 450 IPR008271 GO:0004672|GO:0006468
Viun2g01276 623 ProSiteProfiles LysM domain profile. 159 205 IPR018392 -
Viun2g01276 623 Gene3D Phosphorylase Kinase; domain 1 298 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01276 Viun-Chr2 23323752 23327458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01276 299 623 Receptor kinase-like Gene Family AT1G51940 51.652 7.94e-115 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Viun2g01276 Pkinase 2.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01276 - - gmx:100800907 1018.07