Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01269 ATGAAGAAAGTAGTCTCTGTCACCTCTTTATGCTACCTTGTGCTGATGAAGTTACTGCTGCTATCAAAGACTGTTACAGCAGAACCAAGGGCCAAGACAGTCCTAGTAACATGTGGCAATGTACGAGAGCACAATAGTACTATATTTGTTCCCAATTTTGTTGCAACTATGGAGAAGATCAGTGATGAGATGCGGAAAACTGGCTTTGGCACAGCAGTTGTAGGGACAGGACCTGATGCTAACTATGGCCTGGCCCAGTGTTATGGGGATCTTTCATTGCTTGACTGTGTATTGTGCTATGCTGAGGCACGCACTGTTCTTCCCCAGTGCTACCCTTATAATTCTGGTCGCATTTTCCTTGATGGGTGCTTCATGAGGGCTGAGAATTATAGTTTCTTTAATGAGTACACAGGAGCAGGAGACAGAGCTGTATGTGGGAACACGACCAAGAAGAATTCAAGTTTTCAAGCAGCGGCAAAGCAAGCAGTTTTAAGAGCAGTTCAAGATGCACCCAACAACAAAGGACATGCTAGAGGGAATGTTGCTGTCGCAGGAACAACTAACCAATCTGTTTATGTTCTGGCTGATTGTTGGAGGACTTTGGACCAAAGGTCTTGCAAAGCATGTCTTGAGAAAGCAAATGTTTCCTTACAGGGATGCTTGCCCTGGTCAGAAGGACGAGCACTCAACACCGGCTGCTTCATGAGGTACTCAGACACAGATTTTCTTAACAAGGAGCAGGAAAATGGGAGTTCAAGAGGTAATGTGGTAGTAATAGTGGTTGCAGTAGTTAGTTCGGTGATTGTTTCGGTGGTTGGAGTAACTATTGGAGTTTATATATGGAAACAAAGATACATTCAGAAGAAGCGAAGAGGTTCAAATGATGCAGAAAGGTTAGCAAAATCACTTCAGAACAAAAGCTTGAACTTCAAGTACTCTACATTGGACAAGGCTACTGGATCTTTTCATGAAAATAACAAGTTAGGGCAAGGAGGATTTGGAACAGTTTATAAAGGAGTTCTAGCTGATGGAAGAGAGATTGCTATCAAGAGGTTATATTTCAACAACAGGCATAGAGCAGCAGATTTCTACAACGAAGTGAACATAATTAGTAGTGTGGAACACAAGAATCTGGTCAGACTCTTAGGATGCAGCTGTTCAGGACCTGAAAGTCTGCTTGTTTATGAATTTCTGCCCAATAAAAGTCTTGATCGCTTCATTTTTGATAAAAACAAGGGCAAAGAATTGAACTGGGAAAAGAGATTTGAAATTATCATCGGGACAGCCGAAGGATTAGTTTATCTGCACGAGAACTCTAAAACAAAGATAATTCACAGAGATATAAAAGCCAGCAACATCCTATTGGATGCAAAGTTTCGCGCTAAAATTGCAGATTTTGGTTTGGCCAGATCCTTTCAAGAGGACAAGAGCCACATAAGTACAGCTATTGCAGGAACTTTGGGGTATATGGCTCCTGAGTACCTAGCTCATGGTCAGTTAACAGAAAAGGCAGACGTGTATAGTTTTGGAGTGTTGCTGCTAGAGATGGTCACTGGTAGACAGAACAACAGGAGCATAGTATTGGAATATTCAGACAGTTTAGTTACAGTGGCATGGAAGCATTTTCAGGCAGGGACTGCTGACCAATTATTCGATCCAAATCTAGAGTTACAGGAAGACAACAACCGCGAGGTTAAGGATGATATTTTAAGAGTGGTTCACATAGGACTTCTATGCACCCAAGAGGTCCCTTCTTTACGACCAATCATGTCAAAGACATTACAGATGCTAACAAAGAAGGAGGAGAATCTAATTGCTCCCTCTAATCCACCCTTCCTAGATGAGAGTACCATGGAACTTCATGACACAAGTGTTGACCCATTTTATCATCTTCATGCAGCTCATTCAATGGCTACCATGTCCCATAGCTCTTTCTATCCCAGGTGA 1947 0.4222 MKKVVSVTSLCYLVLMKLLLLSKTVTAEPRAKTVLVTCGNVREHNSTIFVPNFVATMEKISDEMRKTGFGTAVVGTGPDANYGLAQCYGDLSLLDCVLCYAEARTVLPQCYPYNSGRIFLDGCFMRAENYSFFNEYTGAGDRAVCGNTTKKNSSFQAAAKQAVLRAVQDAPNNKGHARGNVAVAGTTNQSVYVLADCWRTLDQRSCKACLEKANVSLQGCLPWSEGRALNTGCFMRYSDTDFLNKEQENGSSRGNVVVIVVAVVSSVIVSVVGVTIGVYIWKQRYIQKKRRGSNDAERLAKSLQNKSLNFKYSTLDKATGSFHENNKLGQGGFGTVYKGVLADGREIAIKRLYFNNRHRAADFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEFLPNKSLDRFIFDKNKGKELNWEKRFEIIIGTAEGLVYLHENSKTKIIHRDIKASNILLDAKFRAKIADFGLARSFQEDKSHISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGVLLLEMVTGRQNNRSIVLEYSDSLVTVAWKHFQAGTADQLFDPNLELQEDNNREVKDDILRVVHIGLLCTQEVPSLRPIMSKTLQMLTKKEENLIAPSNPPFLDESTMELHDTSVDPFYHLHAAHSMATMSHSSFYPR 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01269 648 Gene3D - 31 132 IPR038408 -
Viun2g01269 648 Gene3D - 142 242 IPR038408 -
Viun2g01269 648 Pfam Protein kinase domain 322 521 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01269 648 FunFam Cysteine-rich receptor-like protein kinase 2 31 132 - -
Viun2g01269 648 ProSitePatterns Protein kinases ATP-binding region signature. 328 350 IPR017441 GO:0005524
Viun2g01269 648 ProSiteProfiles Protein kinase domain profile. 322 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01269 648 CDD STKc_IRAK 328 599 - -
Viun2g01269 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672|GO:0006468
Viun2g01269 648 Gene3D Transferase(Phosphotransferase) domain 1 398 608 - -
Viun2g01269 648 FunFam Cysteine-rich receptor-like protein kinase 3 141 242 - -
Viun2g01269 648 SUPERFAMILY Protein kinase-like (PK-like) 306 627 IPR011009 -
Viun2g01269 648 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 82 621 - -
Viun2g01269 648 Pfam Salt stress response/antifungal 145 239 IPR002902 -
Viun2g01269 648 Pfam Salt stress response/antifungal 47 130 IPR002902 -
Viun2g01269 648 ProSiteProfiles Gnk2-homologous domain profile. 137 242 IPR002902 -
Viun2g01269 648 FunFam Cysteine-rich receptor-like protein kinase 2 398 605 - -
Viun2g01269 648 FunFam Putative DUF26-domain receptor-like protein kinase family protein 290 397 - -
Viun2g01269 648 Gene3D Phosphorylase Kinase; domain 1 283 397 - -
Viun2g01269 648 Coils Coil 286 306 - -
Viun2g01269 648 SMART serkin_6 322 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01269 648 ProSiteProfiles Gnk2-homologous domain profile. 31 132 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01269 Viun-Chr2 23234390 23238149 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01269 2 648 Receptor kinase-like Gene Family AT1G70520 66.820 0.0 863
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun2g01269 Pkinase 9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01269 - - gmx:100305420 1128.62