Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01263 ATGGAGCTTAGTAGTTTGGTTTTCTGGCTACTGGGGTTGCTGCTTTTGCAGTTGATGGAGATTTCTTCTGCTGCTCTTTCTCCATCTGGCATAAACTATGAAGTTGTAGCCCTGATGGCTATAAAGGGTGACTTGACTGATCCTCACAACGTTCTGGAAAATTGGGATTCTAGTTCTGTTGATCCATGTAGCTGGAGGATGGTTACGTGTTCCACTGATGGTTCCGTTTCTGTATTGGGATTTCCGAGTCAGAACTTGTCTGGTACACTATCTCCCGGAATTGGAAACCTTACTAACTTGCAATCTGTGTTGCTTCAGAATAATGCCATTTCTGGTAGGATTCCTCCTTCAATAGGAAACTTGAAAAAGCTTCAGACACTTGATCTTTCCAATAATGCATTTAGCGGCGAGATACCCAGTTCTTTGGGAGGCCTCAAGAACCTGAATTATTTGAGGTTAAACAATAACAGCCTTACAGGATCCTGTCCTCAGTCTCTTAGCAACATCGAAGGTCTAACCCTTGTGGACCTCTCCTACAACAATCTGAGTGGTTCCTTGCCTAGAATATCGGCAAGAACATTAAAGATTGTGGGTAACCCTTTAATTTGTGGTCCAAAAGCAAACAACTGTTCTTCTGTTTTACCAGAGCCACTTTCCTTCCCTCCAGATGCACTAAGAGGCCAATCAGATTCTGGTAAAAAAAGCCATCATGTGGCACTTGCTTTTGGTGCAAGCTTTGGTGCTGCATTTGTCATTGTGATTATAGTTGGGTTTCTTGTTTGGTGGCGATATAGACGCAACCAGCAGATATTCTTTGATGTTAACGAACATTATGATCCAGAGGTGCGTCTTGGTCATTTAAAAAGGTTTTCTTTCAAAGAGCTTCGAACTGCAACAGACCATTTCAACTCAAAGAACATTCTTGGAAGAGGTGGCTTTGGAATAGTCTACAAGGCGTGCTTAAATGATGGGTCTGTTGTGGCTGTTAAGAGGTTAAAGGACTACAATGCAGCTGGTGGTGAGATCCAATTTCAAACAGAAGTTGAGACAATCAGTTTGGCTGTCCACCGGAATCTTCTCAGGCTTTCAGGGTTTTGCAGCACTCAGCATGAAAGGCTCCTCGTTTATCCATATATGTCTAATGGAAGTGTAGCCTCTAGATTAAAAGATCATATCCATGGCCATCCGGCGTTAGATTGGAGTAGGCGGAAGAGAATAGCTTTAGGTACAGCAAGAGGGTTGGTTTACTTGCATGAACAATGTGATCCTAAGATTATTCACCGTGATGTGAAAGCAGCTAACATATTGCTAGATGAAGACTTTGAAGCTGTTGTTGGTGATTTTGGTTTAGCCAAGCTTCTGGATCACAGAGACTCCCATGTGACCACTGCTGTGCGTGGCACTGTTGGTCACATTGCTCCAGAGTATCTATCCACTGGCCAATCATCAGAAAAGACTGATGTGTTTGGGTTTGGAATCTTGCTGCTTGAACTGATCACAGGTCACAAGGCTCTAGATTTTGGGCGAGCAGCGAACCAGAAAGGTGTAATGCTTGATTGGGTTAAGAAGCTCCATCAGGATGGAAGATTAAGTCAAATGGTGGACAAAGATCTAAAGGGAAACTTTGATATGATTGAGTTAGAAGAAATGGTTCAGGTTGCACTCTTGTGCACACAATTCAATCCTTCACACCGCCCCAAGATGTCAGAAGTGTTAAAGATGTTGGAAGGGGATGGCTTGGCTGAGAGATGGGAGGCCTCACAGAGGATTGAAACACCGAGGTTTCGGTCTTGTGAGCCTCAAAGATATTCAGATTTAATAGAGGAATCTTCACTCATAATTGAAGCCATGGAGCTTTCTGGCCCTAGGTGA 1872 0.4338 MELSSLVFWLLGLLLLQLMEISSAALSPSGINYEVVALMAIKGDLTDPHNVLENWDSSSVDPCSWRMVTCSTDGSVSVLGFPSQNLSGTLSPGIGNLTNLQSVLLQNNAISGRIPPSIGNLKKLQTLDLSNNAFSGEIPSSLGGLKNLNYLRLNNNSLTGSCPQSLSNIEGLTLVDLSYNNLSGSLPRISARTLKIVGNPLICGPKANNCSSVLPEPLSFPPDALRGQSDSGKKSHHVALAFGASFGAAFVIVIIVGFLVWWRYRRNQQIFFDVNEHYDPEVRLGHLKRFSFKELRTATDHFNSKNILGRGGFGIVYKACLNDGSVVAVKRLKDYNAAGGEIQFQTEVETISLAVHRNLLRLSGFCSTQHERLLVYPYMSNGSVASRLKDHIHGHPALDWSRRKRIALGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGHKALDFGRAANQKGVMLDWVKKLHQDGRLSQMVDKDLKGNFDMIELEEMVQVALLCTQFNPSHRPKMSEVLKMLEGDGLAERWEASQRIETPRFRSCEPQRYSDLIEESSLIIEAMELSGPR 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01263 623 Gene3D Phosphorylase Kinase; domain 1 271 378 - -
Viun2g01263 623 Pfam Protein kinase domain 303 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01263 623 SUPERFAMILY Protein kinase-like (PK-like) 278 576 IPR011009 -
Viun2g01263 623 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524
Viun2g01263 623 FunFam Putative LRR receptor-like serine/threonine-protein kinase 31 212 - -
Viun2g01263 623 FunFam Somatic embryogenesis receptor-like kinase 1 379 595 - -
Viun2g01263 623 Pfam Leucine rich repeat 123 182 IPR001611 GO:0005515
Viun2g01263 623 SMART serkin_6 302 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01263 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Viun2g01263 623 Gene3D Ribonuclease Inhibitor 31 211 IPR032675 -
Viun2g01263 623 SUPERFAMILY L domain-like 32 201 - -
Viun2g01263 623 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Viun2g01263 623 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 586 - -
Viun2g01263 623 ProSiteProfiles Protein kinase domain profile. 302 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01263 623 FunFam Somatic embryogenesis receptor kinase 1 271 378 - -
Viun2g01263 623 Gene3D Transferase(Phosphotransferase) domain 1 379 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01263 Viun-Chr2 23159886 23166049 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01263 67 623 Receptor kinase-like Gene Family AT1G60800 77.193 0.0 835
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Viun2g01263 Pkinase 1.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01263 - - vum:124829101 1184.86