Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01257 ATGCAGATATTCGTGAAAACCCTCACGGGGAAGACCATCACCCTTGAAGTGGAGTCTTCGGACACCATAGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGATCAGCAGCGGCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTTGTCCTCCGCCTCCGCGGCGGACGCTCCGTCGCGATGCAGATATTCGTGAAAACCCTTACGGGGAAAACCATTACCCTTGAGGTTGAGTCTTCGGACACAATCGATAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGATCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCCACTCTCCACCTCGTTCTCCGTCTCCGTGGTGGTGCCAAGAAGCGCAAGAAGAAGACCTATACCAAGCCTAAGAAGATCAAGCACAAGCACAAGAAGGTGAAGCTCGCTGTCTTGCAGTTCTACAAGGTTGACGACTCCGGCAAGGTGCAGAGGCTTCGGAAGGAGTGCCCCAACGCTGAGTGCGGCGCTGGAACCTTCATGGCTAACCATTTCGATCGTCACTACTGCGGCAAGTGTGGTCTCACTTATGTCTACCAGAAGGCCGGTGCCTAA 708 0.5664 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGRSVAMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAGA 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01257 235 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Viun2g01257 235 Pfam Ubiquitin family 83 154 IPR000626 GO:0005515
Viun2g01257 235 Pfam Ribosomal protein S27a 182 227 IPR002906 GO:0003735|GO:0005840|GO:0006412
Viun2g01257 235 PANTHER UBIQUITIN 81 169 - -
Viun2g01257 235 ProSiteProfiles Ubiquitin domain profile. 81 156 IPR000626 GO:0005515
Viun2g01257 235 SUPERFAMILY Ubiquitin-like 81 173 IPR029071 -
Viun2g01257 235 SMART ubq_7 81 152 IPR000626 GO:0005515
Viun2g01257 235 SMART ubq_7 1 72 IPR000626 GO:0005515
Viun2g01257 235 SUPERFAMILY Ubiquitin-like 1 78 IPR029071 -
Viun2g01257 235 PRINTS Ubiquitin signature 53 74 IPR019956 -
Viun2g01257 235 PRINTS Ubiquitin signature 32 52 IPR019956 -
Viun2g01257 235 PRINTS Ubiquitin signature 11 31 IPR019956 -
Viun2g01257 235 SUPERFAMILY Zn-binding ribosomal proteins 180 233 IPR011332 GO:0006412
Viun2g01257 235 CDD Ubl_ubiquitin 1 76 - -
Viun2g01257 235 FunFam Ubiquitin-40S ribosomal protein S27a 81 159 - -
Viun2g01257 235 Gene3D - 161 234 IPR038582 -
Viun2g01257 235 CDD Ubl_ubiquitin 81 156 - -
Viun2g01257 235 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Viun2g01257 235 ProSitePatterns Ubiquitin domain signature. 107 132 IPR019954 -
Viun2g01257 235 Gene3D - 81 160 - -
Viun2g01257 235 FunFam Polyubiquitin 3 1 76 - -
Viun2g01257 235 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Viun2g01257 235 SMART Ribosomal_S27_2 182 227 IPR002906 GO:0003735|GO:0005840|GO:0006412
Viun2g01257 235 Gene3D - 1 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01257 Viun-Chr2 23082611 23087504 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01257 1 76 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 100.000 1.72e-48 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01257 K08770 - epa:110252685 369.777