Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01256 ATGTCATCACTGAACCATCTTTTTGATCTTCCTGAACAGATATGTTACGTACAATGCGGATTCTGCACCACTATATTAATGGTGAGTGTTCCATGCAGCAGTTTGTCAATGGTGGTGACAGTAAGATGTGGTCACTGCACAAGCCTTCTTTCTGTTAACATGATGAAAGCTTCTTTTGTCCCTTTCCACCTTTTAGCATCTCTTAGTCATCTTGAGCCAAAAGAAAGTAGTCCAGAACAACACGATGGTAACAAGACTTTGAACAGCCACAGTGCATCCCTCATGACCTATTCTGATTGTGAGGAAGAGGATCTCATTCCAATGAGTAATATTGTGAATAAACCTCCAGAAAAGAGACAGCGAACGCCATCAGCTTATAACTGCTTCATCAAAGAAGAGATTAAAAGGCTAAAGGCTGAAAACCCTGACATGGCTCACAAAGAAGCATTTAGTACTGCTGCAAAAAATTGGGCCAATTTTCCCCCAACTCAGTGCAAAGGAGATGATCAAGAAAGCTGTAGCCAGACAGATCAAGTTGTGGATCTTGACTCCCAAGTGGACCCTCCTGATGCTGAGGTGAATGAAGAAGATGGCGAAGGTTTCCGTGGAAGAAAGGTCCAAAGGAACTCCATGTTTGAAAGGACAGCATTTGAGTGA 657 0.4262 MSSLNHLFDLPEQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLSHLEPKESSPEQHDGNKTLNSHSASLMTYSDCEEEDLIPMSNIVNKPPEKRQRTPSAYNCFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFPPTQCKGDDQESCSQTDQVVDLDSQVDPPDAEVNEEDGEGFRGRKVQRNSMFERTAFE 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01256 218 Gene3D High mobility group box domain 109 170 IPR036910 -
Viun2g01256 218 CDD HMG-box_SF 121 164 - -
Viun2g01256 218 FunFam Axial regulator YABBY 4 109 176 - -
Viun2g01256 218 Pfam YABBY protein 11 164 IPR006780 GO:0007275
Viun2g01256 218 MobiDBLite consensus disorder prediction 163 218 - -
Viun2g01256 218 MobiDBLite consensus disorder prediction 163 182 - -
Viun2g01256 218 PANTHER PROTEIN YABBY 6-RELATED 1 174 IPR006780 GO:0007275
Viun2g01256 218 MobiDBLite consensus disorder prediction 195 211 - -
Viun2g01256 218 SUPERFAMILY HMG-box 110 163 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01256 Viun-Chr2 23072505 23074643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01256 2 218 C2C2-YABBY Transcription Factor Family AT1G23420 58.772 7.18e-77 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Viun2g01256 YABBY 3.7e-63 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01256 K25796 - gmx:100804172 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01256 2 23072505 23074643 Viun2g01256 2 23072505 23074643 ECH
Viun2g01256 2 23072505 23074643 Viun3g03233 3 39098995 39112259 PCT