Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01211 ATGGCTTCTTCAAGGAGGATCTCAAGGCTGCTCTCTCCTTCTTTTCTTTCTGCTACCACTAATTCTTTGTTTTCTAGAGGTGGAAGTGGTACTCTTGTTGGAGGACTAAGTAAATTCAGCACTACTGCTGCTGCCACTGAAGAACCAATTAAACCAGCAGTTAGAGTAGAACACACTCAGCTCTTAATCGATGGAAAATTCGTTAATTCTGCTTCCGGCAAAACTTTTCCAACGTTGGATCCGAGGACAGGAGATGTGATTGCTCATATTGCTGAGGGGGACCATGAAGATGTTGATCGAGCAGTTGCCGTTGCTCGCAAGGCATTCGACCATGGACCTTGGCCAAAGATGACAGCCTATGAAAGGCAAAAGGTACTGCTACGTGCTGCTGATCTGATTGAAAAGCACACTGATGAGATTGCTGCACTTGAGACATGGGATACTGGGAAGCCATACGAACAAGTTGCTAAAGTTGAAATTCCAATTATTGTTCGTCTATTTCGATACTATGCTGGTTGGGCAGATAAGATTCATGGTATGACAGTTCCAGCTGATGGGCCATATACTGTGCAAACATTGCATGAACCTATTGGTGTGGCCGGTCAGATCATTCCATGGAACTTTCCTCTTCTCATGTTTACCTGGAAGATTTGCCCAGCATTGGCCTGTGGTAACACTGTTGTCATCAAAACAGCTGAGCAGACTCCTTTATCTGCTTTCTATGCATCTAAGTTGCTTCATGAGGCAGGACTTCCTCCTGGTGTGTTGAATGTCATATCTGGTTTTGGTCCAACTGCTGGTGCTGCCATTGCCACTCACATGAACATAGACAAGCTTGCTTTCACTGGTTCAACCGATACTGGAAAAATTGTCCTTGAACTTGCAGCTAAAAGCAATCTTAAGCCTGTTACTCTGGAGCTTGGTGGCAAATCCCCTTTTATTGTATGTGAAGATGCTGATGTAGATGAGGCTGTTGAGCAAGCACACTTTGCATTATTCTTCAACCAGGGACAGTGCTGCTGTGCTGGGTCTAGAACATTTGTACACGAAAGTGTGTACGATGAATTTGTTCAGAAAGCAAAGGCACGTGCTTTGAAACGTTCTGTTGGTGATCCATTCAAAGTAGGAATAGAGCAAGGTCCTCAGATTGATTCAGAACAATTTGAGAAAATATTGAAGTATATTAGATCTGGTGTTGAAAGTGGAGCTACACTTGAAACTGGAGGAGATAGATTTGGCAACTCCGGCTTCTATGTTCAACCTACTGTCTTCTCAAATGTTAAGGATGATATGCTGATTGCAAAGGACGAGATCTTTGGCCCAGTGCAATCCATATTAAAATTCAACGACATTGATGAGGTGATTGAAAGAGCAAATAACACACACTACGGGCTTGCGGCGGGAGTGTTCACAAAAAACATTGACACAGCAAACACTTTGAGCAGAGCATTGAAAGCTGGAACAGTGTGGGTGAACTGCTTTGACATATTTGATGCAGCAATTCCCTTTGGAGGGTACAAAATGAGTGGTCAAGGAAGAGAAAAAGGAGAATACAGTCTCAAGAACTACTTGCAAGTCAAGGCTGTCATCACACCCTTGAAGAACCCAGCTTGGCTTTGA 1620 0.4358 MASSRRISRLLSPSFLSATTNSLFSRGGSGTLVGGLSKFSTTAAATEEPIKPAVRVEHTQLLIDGKFVNSASGKTFPTLDPRTGDVIAHIAEGDHEDVDRAVAVARKAFDHGPWPKMTAYERQKVLLRAADLIEKHTDEIAALETWDTGKPYEQVAKVEIPIIVRLFRYYAGWADKIHGMTVPADGPYTVQTLHEPIGVAGQIIPWNFPLLMFTWKICPALACGNTVVIKTAEQTPLSAFYASKLLHEAGLPPGVLNVISGFGPTAGAAIATHMNIDKLAFTGSTDTGKIVLELAAKSNLKPVTLELGGKSPFIVCEDADVDEAVEQAHFALFFNQGQCCCAGSRTFVHESVYDEFVQKAKARALKRSVGDPFKVGIEQGPQIDSEQFEKILKYIRSGVESGATLETGGDRFGNSGFYVQPTVFSNVKDDMLIAKDEIFGPVQSILKFNDIDEVIERANNTHYGLAAGVFTKNIDTANTLSRALKAGTVWVNCFDIFDAAIPFGGYKMSGQGREKGEYSLKNYLQVKAVITPLKNPAWL 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01211 539 Pfam Aldehyde dehydrogenase family 68 529 IPR015590 GO:0016491
Viun2g01211 539 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 333 344 IPR016160 GO:0016491
Viun2g01211 539 FunFam Aldehyde dehydrogenase, putative 501 527 - -
Viun2g01211 539 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 305 312 IPR029510 GO:0016491
Viun2g01211 539 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 63 321 - -
Viun2g01211 539 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 311 500 IPR016163 GO:0016620
Viun2g01211 539 FunFam Mitochondrial aldehyde dehydrogenase 2 311 500 - -
Viun2g01211 539 CDD ALDH_F2BC 56 531 - -
Viun2g01211 539 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 73 529 IPR016162 GO:0016491
Viun2g01211 539 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 43 529 - -
Viun2g01211 539 SUPERFAMILY ALDH-like 55 533 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01211 Viun-Chr2 22871841 22876575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01211 3 539 Aldehyde Dehydrogenase Gene Family AT3G48000 76.022 0.0 877
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01211 K00128 - gmx:100786773 957.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01211 2 22871841 22876575 Viun2g01211 2 22871841 22876575 ECH
Viun2g01211 2 22871841 22876575 Viun3g03265 3 39542977 39546518 PCT