Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01201 ATGTATAGGGTTCGCTCTCAAATCCTTCTCAGCAATGGTGCTATCACCAACCCCCCTATTCTTTCTCCATATTCTTCTTCTTCTTCATCATCATCATCATCACCCTTTGTGCCTTATGTTTCCAACTACCAGAAACAATCAGCACCATCCCCAACTTCTTCATCGGGGAACAAAATAAGCCCTGCAATTCTTTTCATCATAGTCATTTTAGCTGTGGTGTTTTTCATCTTGGGTCTCCTTCACTTGCTTGTTAGATTTCTCATAAAGCATAGGTCTTCTAATTCATCAATTTCCCAATCAAACAGATACCCTGACATGTCCGAATCAGATGCTTACCAGAGACAGTTACAACAGCTCTTCCATCTTCATGATTCAGGCCTGGATCAGGCTTTCATAGATGCTCTCCCCGTCTTCTTTTACAAAGAGATTATAGGCCTGAAAGAGCCATTTGATTGTGCTGTTTGCCTCTGTGAGTTCTTGGAACAAGACAAATTGAGATTGTTGCCCATGTGTAATCATGCTTTTCACATTGAATGCATAGATACATGGTTGTTGTCCAATTCAACTTGCCCTCTCTGCAGAGGGACTCTGTATTCACCAGGCTTTGCCTTTGAGAACTCAGCTTTTGACTTTGAAAGTCAACTTGAGGAAGATGAGGTGTCAGGCAGTGGTGGAGGTGGGGTTGGGGCTGCTTCTTTTCACAAAACTGTAGAAAGCCACATAGTGAATGGCAAAAGGGTGTTTTCTGTTAGGCTTGGAAAATTCAGAAGCACTAACAATGGTGTGGAGAGAGGTGAATGTGAGAGCAGTAGTGGGAATTTGGATGTTAGGAGATGCTATTCAATGGGGTCTTTTCAGTATGTGGTGGCTGATTCAGATCTGAGAGTGGCTCTAGGCCCTACAAGAGGTGATGGAGGCAGTGGCAGCATGAGACAACTGAAGGGAAGAACAGCTCCAAATGGAAGTTCTTTCATTGATGGAGATATTGAGGGTAAGAAAATCAACCTTGCAAGGAAAGGTGAAAGCTTTTCTGTTTCCAAGATCTGGCAATGGTCTAGGAAAGATAAGTTATCAGGTTCATCTGATTCTCACTTCCATAATTCTACTTTGCCATGGATGAATAAAGCCAGAGGTACTTGA 1140 0.4263 MYRVRSQILLSNGAITNPPILSPYSSSSSSSSSSPFVPYVSNYQKQSAPSPTSSSGNKISPAILFIIVILAVVFFILGLLHLLVRFLIKHRSSNSSISQSNRYPDMSESDAYQRQLQQLFHLHDSGLDQAFIDALPVFFYKEIIGLKEPFDCAVCLCEFLEQDKLRLLPMCNHAFHIECIDTWLLSNSTCPLCRGTLYSPGFAFENSAFDFESQLEEDEVSGSGGGGVGAASFHKTVESHIVNGKRVFSVRLGKFRSTNNGVERGECESSSGNLDVRRCYSMGSFQYVVADSDLRVALGPTRGDGGSGSMRQLKGRTAPNGSSFIDGDIEGKKINLARKGESFSVSKIWQWSRKDKLSGSSDSHFHNSTLPWMNKARGT 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01201 379 ProSiteProfiles Zinc finger RING-type profile. 152 194 IPR001841 -
Viun2g01201 379 SUPERFAMILY RING/U-box 131 200 - -
Viun2g01201 379 FunFam RING-H2 finger protein ATL46 114 199 - -
Viun2g01201 379 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 54 349 - -
Viun2g01201 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 199 IPR013083 -
Viun2g01201 379 CDD RING-H2_EL5-like 151 194 - -
Viun2g01201 379 MobiDBLite consensus disorder prediction 300 324 - -
Viun2g01201 379 SMART ring_2 152 193 IPR001841 -
Viun2g01201 379 Pfam Ring finger domain 151 194 IPR001841 -
Viun2g01201 379 MobiDBLite consensus disorder prediction 358 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01201 Viun-Chr2 22743193 22745059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01201 53 361 C3H Transcription Factor Family AT2G18650 40.533 7.53e-60 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01201 - - gmx:100805154 595.89