Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01138 ATGGAAATGGAAAAGGATATCTGTGATCTTTCTCAAACATGGGATGGTGATAATGGCAACTCCACTGAGAAAAGGCTCAGGTTATTTGGCTTTGAGCTAAACCCTTCCAAAGAAAGCTGTGTCAAAGAGTCTGGTGAAGGAGATGAAAGCGTAAACTCCTCTAACTCAGTCTCATCAGGAGGAGACAAAACCCTGCAAGAAAAGACCTCAGCCAAAGACCCAGATGAGAAGAAGTTCGAGTGCCAATACTGTTTCAAAGAATTTGCAAATTCACAAGCACTTGGTGGGCACCAAAATGCCCACAAGAAAGAGAGAATGAAGAAGAAGAGGTTGCAGCTTCAATCCATAAACCGTTACCTCCAACACCCTTTTCAAACCAGCCATGGATTTGCTTACCAAACCTCAGATAGTCCTTGGTTCTATGACCCCTCTACCTATAATAATTCTGAGTTCACCCTTTGTGAAGAACCTCAGATTAGCTTCAACTCAAATGTTTTAGATACCAACTTTTCTTGTGACCAGAAATCTAGTTGGTATTCTGTGGCATCACACCCCTCTTCACAACAAGATACTTGCATGTTCACTTTCTCCAATGCAAATAATAACTCTCCTTTCATCTATAAACCTTGCCACTACCCTTCTTCAAACCAGAGTCATAGCAAAGCCCTAGATCTTCAACTAGGCCTCAACTTGGAGTCAAATACAATAAGGAGGATGTAA 720 0.4153 MEMEKDICDLSQTWDGDNGNSTEKRLRLFGFELNPSKESCVKESGEGDESVNSSNSVSSGGDKTLQEKTSAKDPDEKKFECQYCFKEFANSQALGGHQNAHKKERMKKKRLQLQSINRYLQHPFQTSHGFAYQTSDSPWFYDPSTYNNSEFTLCEEPQISFNSNVLDTNFSCDQKSSWYSVASHPSSQQDTCMFTFSNANNNSPFIYKPCHYPSSNQSHSKALDLQLGLNLESNTIRRM 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01138 239 MobiDBLite consensus disorder prediction 1 21 - -
Viun2g01138 239 SUPERFAMILY beta-beta-alpha zinc fingers 75 106 IPR036236 -
Viun2g01138 239 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 106 IPR013087 -
Viun2g01138 239 FunFam zinc finger protein 5 53 129 - -
Viun2g01138 239 Gene3D Classic Zinc Finger 53 130 - -
Viun2g01138 239 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Viun2g01138 239 MobiDBLite consensus disorder prediction 38 73 - -
Viun2g01138 239 MobiDBLite consensus disorder prediction 46 65 - -
Viun2g01138 239 PANTHER ZINC FINGER PROTEIN 5 20 232 IPR044299 GO:0010090
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01138 Viun-Chr2 22269943 22271037 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01138 12 155 C2H2 Transcription Factor Family AT5G06650 34.694 1.14e-16 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun2g01138 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01138 - - gmx:100527006 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01138 2 22269943 22271037 Viun2g01138 2 22269943 22271037 ECH