Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01119 ATGAAGAGGTCTAGAGATGAAGTTTTCACGAGTTGTTCTCAACTCAAACGGCCTGTGGTGTCTGCCCGAGGAGAAGCGTCTGGGCAACCGCAGATGGCAAATGGAGGTGCTCAGAAATTGACAACTAATGATGCCCTAGCATATCTTAAAGCAGTAAAGGATATATTTCAAGATAAGAGGGACAAGTATGACGACTTTTTGGAGGTTATGAAAGATTTCAAGGCTCAAAGAATTGATACCGCTGGTGTCATTGGAAGAGTGAAGGAGCTGTTTAAAGGCCATAGAGATCTTATATTGGGATTTAACACCTTCTTGCCTAAGGGGTATGAAATCACACTTCCGTCAGAAGATGAACAACCTGCTCCAAAGAAACCTGTTGAATTTGAAGAAGCTATAAATTTTGTGAACAAAATAAAGACTCGTTTTCAAGGCGACGATCATGTGTACAAATCATTTCTTGACATATTGAATATGTACAGAAAGGAAAACAAGTCTATTACCGAGGTCTACCAGGAGGTTGCTGCTATTTTCCAGGACCACCCTGATCTTCTTGATGAGTTTACACATTTCCTTCCAGACGCTTCTGCAGCTGCCTCTACTCATTATGCTTCTGCTCGAAATTCTATTCTTCGTGATAGGAGCTCAATGCCAACAGTACGGCCAATGCATGTTGAAAAGCGAGAAAGGACCATGGCTTCACATGGGGATCGTGACCCCAGTGTTGATCGTCCTGATCCAGACCAGGACAGAGGTTTGTTAAGGATAGAAAAGGAGAGGAGACGTGCGGAGAAGGAAAAGGAACGCAGAGAAGATAGAGATAAGAGAGAACGTGAAAAGGATGATAGAGATTATGAGCATGATAGGGAGCGATTTCCTCACAAACGGAATCGTAAGGTTGAGGACTCTGGAGCTGAACCATTGCTTGATGCAGATGAAAATTTTGGTACGCGTCCTATGTCATCCACTTGTGATGATAAAAATTCTCTGAAAAGTATGTACAGTCAAGAGTTTGCTTTCTGCGAAAAAGTCAAAGAAAAATTACGGAATCCTGATGACTATCAGGAATTTTTGAAGTGCTTACATATTTACAGCAGGGAAATAATTACCCGACAAGAGTTGCAGTCATTGGTGGGCGATTTACTGGGAAAGTATCCAGATCTTATGGAGGGGTTTAATGAATTTTTGTTACAATCTGAAAAAAATGATGGTGGATTTCTTGCTGGTGTTATGAATAAAAAGTCCTTATGGAATGATGGACATGGACTGAAACAAATGAAGGGTGAAGACAGGGAAAGAGAAAGGGATCGAGATAGAGACCGTTATAGGGATGATGGGATGAAAGAAAGGGACCGTGAGTTCCGAGAAAGGGATAAATCTACTGTGATTGCCAACAAAGATGTTTTAGGCTCTAAGATGTCTCTATATCCCAGCAAGGATAAGTATTTATCAAAACCTATAAATGAGCTGGACCTTTCTAACTGCGACCAGTGTACTCCTAGTTATCGGCTCCTACCAAAAAATTACCCAATACCTATAGCTAGCCAGAAAACAGAACTTGGTACTGAAGTGTTGAATGATCACTGGGTATCTGTCACTTCAGGAAGTGAGGATTACTCCTTCAAACATATGCGCAAAAATCAGTATGAAGAGAGCTTGTTTAGATGCGAAGATGACAGGTTTGAACTTGACATGTTGTTAGAGTCTGTGAATGTGACAACCAAGCGAGTAGAAGAGCTGTTAGACAAGATCAATAATAATACCATTAAAGGAGACAGCCTAATTCGTATTGAAGAGCACTTAACAGCTATAAATCTTAGGTGTATTGAACGATTATATGGTGATCATGGGCTTGATGTGATGGAGGTTTTAAGGAAGAATGCACCTCTAGCTTTGCCAGTGATATTAACACGCTTGAAGCAGAAACAGGAAGAGTGGGCAAGGTGCCGTGCTGATTTTAGTAAAGTTTGGGCTGAAATATATTCTAAGAACTATCACAAATCTCTTGATCATCGTAGCTTCTACTTTAAGCAGCAGGATACAAAAAGCCTTAGCACCAAAGCCTTGCTCGCAGAAATCAAAGAAATTAGTGAAAAGAAACGCAAAGAAGATGATGTTCTTCTTGCTATTGCTGCTGGCAACAGACGGCCAATTCTACCAAACATGGAATTTAAGTATTCTGATCAAGATATTCATGAAGATTTGTATCAGCTCATAAAATATTCCTGTGGAGAAATTTGCACAACCGAACATGTGGATAAAGTTATGAAGGTTTGGACAACATTTTTAGAACCAATGCTTTGTGTTCCTTCACGGCCCCAGGGTGCAGAGGATACAGAAGATGTTGTCAAGACTAAGAATAATAGTGTCAAGAATGGTACGGCAAGTGTTGTTGAAAGTGATGGTAGCCCTGTTGTGGGTGCTACCGTCATGAATCAAAAGCATATAAATGTTTCCAGAAATGGGGATGGTTGTATGCCAGTAGATCAGTCAACTTCTAGTAAAGCATGGCAATCAAATGGTGATAGTGGGGTTAGAGAGGATAGGTATCTTGATGACCGTGTATTACGTAAAACTGAAACTTTGGGAAATAATACACAACATGGTAAAATGAATAATATTGCTTTCCCACCTAATGAACTATCAGGATTTAATAATAAGCAAGACCAGTCTAGTGAAAGGTTAGTGAATGCAAATGTCTCTCCCGCATCTGGAACGGAGCAAAGCAATGGAAGGACAAACATAGATAATTTGTCAGGACTCACTGCCACCCCAGCTAGACCTGTTAATGCATCTGCTGAAGGAGGACCTGATGTTCCACCTTCAGAGGGTGGTGATTCTGCAAGACCGGGTACATCCACAAATGGGGCCATCACCGGAGGCACCAAAGTCCACCGATACCAAGAGGAATCAGTTCGACCCTTCAAAAGTGAAAGAGAAGAGGTGCATAAAGGAAAGGATGGTGGTATGAGTCGGCCATATCAAGATAGACATGGGGACGATGTTTGTGGTGAAACCAGAGGAGAAAACGATGTTGATGCTGATGATGAAGGTGAAGAAAGTCCTCACAGGTCATCAGAGGACAGTGAAAATGCATCTGAAAATGTTGATGTTTCTGGCAGCGAGTCTGCTGATGGTGAGGAGTGTTCTCGAGAAGAGCATGAGGATGGAGAACATGATAACAAGGCTGAGAGTGAAGGTGAAGCTGAAGGAATAGCCGATGCCCATGACGTTGAAGGAGATGGAATGTCATTGCCATACTCTGAACGCTTTCTCCTAACTGTGAAGCCACTGGCAAAGCATGTTCTTCCAATGTTACATGAGAAGGACAGGAATTCACGAGTTTTCTATGGAAACGATTCCTTTTATGTTCTTTTTAGACTTCATCAGACATTGTATGAGAGGATACAATCAGCAAAGATTAACTCATCATCTGCTGATAGGAAATGGAAGGCTTCGAGTGATACAAGCTCCACGGATCAATATGACAGATTCATGAATGCCCTTTATAGTTTGCTCGACGGTTCGTCTGATAATACAAAATTTGAGGATGATTGTCGAGCTATAATTGGAATTCAGTCATATGTCTTATTCACATTAGACAAGCTGATATATAAACTCGTTAAACAGCTTCAAGCTGTTGCTGCTGATGAGATGGATAATAAGCTTCTACAACTACATGCATATGAGAAATCAAGAAAACCTGAAAAATTTGTCGACATAGTTTATCATGAAAATGCCCGTGTTCTTCTCCATGATGAGAACATATATCGTGTTGAATATTCACCTGGAGCAACGAAACTGTCTATTCAACTGATGGACTCTGGACATGATAAACCTGAAGTGACTGCTGTTTCGATGGACCCTAATTTTTCAACCTATCTACACAATGACTTCCTGTCTGTCGTCCCTGAAAAAGAGAAGTCAGGGATTTTCTTGAAGAGGAATAAACGTAGATATGCTGGTAGTGATGAATTTTCAAGTCAGGCTATGGAAGGACTACAGATTATCAATGGTCTGGAGTGCAAGATTGCTTGCAGTTCATCTAAGGTCTCTTACGTTTTAGATACTGAAGACTTTTTGTATCGGGTGAGAAGGAAACGAAGAGTCTTGCATCCGAGGAGTTCAGGCACCCATGAACAGGCACAGTCTTCAAACATTCGTTCTAGAAGACTGCAACGATTCCGCAACATGTTTTCCATTACATGA 4206 0.4108 MKRSRDEVFTSCSQLKRPVVSARGEASGQPQMANGGAQKLTTNDALAYLKAVKDIFQDKRDKYDDFLEVMKDFKAQRIDTAGVIGRVKELFKGHRDLILGFNTFLPKGYEITLPSEDEQPAPKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSITEVYQEVAAIFQDHPDLLDEFTHFLPDASAAASTHYASARNSILRDRSSMPTVRPMHVEKRERTMASHGDRDPSVDRPDPDQDRGLLRIEKERRRAEKEKERREDRDKREREKDDRDYEHDRERFPHKRNRKVEDSGAEPLLDADENFGTRPMSSTCDDKNSLKSMYSQEFAFCEKVKEKLRNPDDYQEFLKCLHIYSREIITRQELQSLVGDLLGKYPDLMEGFNEFLLQSEKNDGGFLAGVMNKKSLWNDGHGLKQMKGEDRERERDRDRDRYRDDGMKERDREFRERDKSTVIANKDVLGSKMSLYPSKDKYLSKPINELDLSNCDQCTPSYRLLPKNYPIPIASQKTELGTEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLDKINNNTIKGDSLIRIEEHLTAINLRCIERLYGDHGLDVMEVLRKNAPLALPVILTRLKQKQEEWARCRADFSKVWAEIYSKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKRKEDDVLLAIAAGNRRPILPNMEFKYSDQDIHEDLYQLIKYSCGEICTTEHVDKVMKVWTTFLEPMLCVPSRPQGAEDTEDVVKTKNNSVKNGTASVVESDGSPVVGATVMNQKHINVSRNGDGCMPVDQSTSSKAWQSNGDSGVREDRYLDDRVLRKTETLGNNTQHGKMNNIAFPPNELSGFNNKQDQSSERLVNANVSPASGTEQSNGRTNIDNLSGLTATPARPVNASAEGGPDVPPSEGGDSARPGTSTNGAITGGTKVHRYQEESVRPFKSEREEVHKGKDGGMSRPYQDRHGDDVCGETRGENDVDADDEGEESPHRSSEDSENASENVDVSGSESADGEECSREEHEDGEHDNKAESEGEAEGIADAHDVEGDGMSLPYSERFLLTVKPLAKHVLPMLHEKDRNSRVFYGNDSFYVLFRLHQTLYERIQSAKINSSSADRKWKASSDTSSTDQYDRFMNALYSLLDGSSDNTKFEDDCRAIIGIQSYVLFTLDKLIYKLVKQLQAVAADEMDNKLLQLHAYEKSRKPEKFVDIVYHENARVLLHDENIYRVEYSPGATKLSIQLMDSGHDKPEVTAVSMDPNFSTYLHNDFLSVVPDXKEKSGIFLKRNKRRYAGSDEFSSQAMEGLQIINGLECKIACSSSKVSYVLDTEDFLYRVRRKRRVLHPRSSGTHEQAQSSNIRSRRLQRFRNMFSIT 1402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01119 1402 Pfam C-terminal domain of Sin3a protein 1115 1361 IPR031693 -
Viun2g01119 1402 Pfam Paired amphipathic helix repeat 147 191 IPR003822 GO:0006355
Viun2g01119 1402 Pfam Paired amphipathic helix repeat 61 105 IPR003822 GO:0006355
Viun2g01119 1402 Pfam Paired amphipathic helix repeat 351 395 IPR003822 GO:0006355
Viun2g01119 1402 MobiDBLite consensus disorder prediction 283 327 - -
Viun2g01119 1402 MobiDBLite consensus disorder prediction 859 925 - -
Viun2g01119 1402 MobiDBLite consensus disorder prediction 965 1008 - -
Viun2g01119 1402 MobiDBLite consensus disorder prediction 946 960 - -
Viun2g01119 1402 MobiDBLite consensus disorder prediction 218 259 - -
Viun2g01119 1402 Gene3D Paired amphipathic helix 44 106 IPR036600 GO:0006355
Viun2g01119 1402 Gene3D Paired amphipathic helix 327 399 IPR036600 GO:0006355
Viun2g01119 1402 ProSiteProfiles PAH domain profile. 38 108 IPR003822 GO:0006355
Viun2g01119 1402 SMART hdac_interact2seq4b 493 593 IPR013194 -
Viun2g01119 1402 ProSiteProfiles PAH domain profile. 329 398 IPR003822 GO:0006355
Viun2g01119 1402 PANTHER SIN3B-RELATED 38 1258 IPR039774 GO:0003714
Viun2g01119 1402 MobiDBLite consensus disorder prediction 420 443 - -
Viun2g01119 1402 SUPERFAMILY PAH2 domain 38 107 IPR036600 GO:0006355
Viun2g01119 1402 SUPERFAMILY PAH2 domain 327 395 IPR036600 GO:0006355
Viun2g01119 1402 MobiDBLite consensus disorder prediction 857 1082 - -
Viun2g01119 1402 MobiDBLite consensus disorder prediction 283 305 - -
Viun2g01119 1402 FunFam Paired amphipathic helix SIN3-like protein 123 194 - -
Viun2g01119 1402 MobiDBLite consensus disorder prediction 1043 1076 - -
Viun2g01119 1402 MobiDBLite consensus disorder prediction 817 840 - -
Viun2g01119 1402 MobiDBLite consensus disorder prediction 817 845 - -
Viun2g01119 1402 FunFam Paired amphipathic helix protein SIN3 326 400 - -
Viun2g01119 1402 FunFam Paired amphipathic helix protein Sin3 44 106 - -
Viun2g01119 1402 MobiDBLite consensus disorder prediction 208 259 - -
Viun2g01119 1402 SUPERFAMILY PAH2 domain 122 193 IPR036600 GO:0006355
Viun2g01119 1402 Gene3D Paired amphipathic helix 123 195 IPR036600 GO:0006355
Viun2g01119 1402 ProSiteProfiles PAH domain profile. 124 194 IPR003822 GO:0006355
Viun2g01119 1402 MobiDBLite consensus disorder prediction 1016 1030 - -
Viun2g01119 1402 Pfam Sin3 family co-repressor 496 587 IPR013194 -
Viun2g01119 1402 Coils Coil 252 281 - -
Viun2g01119 1402 MobiDBLite consensus disorder prediction 422 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01119 Viun-Chr2 22018558 22031045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01119 29 143 WRKY Transcription Factor Family AT4G12020 48.718 1.68e-23 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun2g01119 Sin3a_C 4.6e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01119 K11644 - gmx:100811928 2476.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01119 2 22018558 22031045 Viun2g01119 2 22018558 22031045 ECH