Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01112 ATGTCTCGCACGTGTTCACAGTGCGGGAACAACGGCCACAACTCACGGACATGCACCGACGGTGGTGCCGCTGTCTCCGGCGGCGCGTCTCCCCGGGAGAGCGGCTTCATGCTGTTTGGCGTGCGAGTCACCGAAGGAATTTCCTCCTTCAGGAAGAGCGCTAGCATGAACAACCTCTCTCAGTACGACGCCGATTCCAACACAGCCGACGCCGGCTACGCCTCCGACGACGTCGTTCACGCCTCCGGTCGCACGCGCGAGCGCAAGCGAGGTGTTCCTTGGACGGAGGAAGAGCACAGACTGTTCCTGTTAGGGTTGCACAAAGTCGGAAAGGGAGATTGGAGAGGAATTTCTAGAAATTTCGTCAAAACTCGCACGCCAACTCAGGTCGCTAGTCACGCTCAGAAGTACTTCCTCCGTCGCCACAATCAGAACCGCCGACGCCGGAGATCTAGCCTCTTTGACATCACTACCGATACGGTGATGGAGTCTTCTACTATAATGGAAGAAGAACAAGTTCAGCAAGAAACGGCGGCGGCGCCTATCCCCGCAGCATATCCGCCGTCGCATTACGGCTGTTTCCCTGGCGCAGGTTTTCCGATGAGTCTATCTCCAGTGGTGTTGCCGGCTACCGGTGAGAGGCTAGCCAAGCCGATTAGGCCGACGCCGATTTTGCCGGTCCCACCGTCTTCCAAGATGGCTAGTTTGAACTTGAAAGAGAAGGCCTCTCCGACAAATCTCATAGAGCCTTTACCGTTGTCGTTGAATCTGCCATCGCCGACACCGCGGTCACAGGATCAGTCGCCGGCGAATAGTGACCACTCATCGCCGTCGTCATCATCATCGACTTTTCAGGCGATTTCTGCTGGGAAGTTCAGCGGCGGTGGGGACAGCATCATCAGCGTTGCTTGA 912 0.568 MSRTCSQCGNNGHNSRTCTDGGAAVSGGASPRESGFMLFGVRVTEGISSFRKSASMNNLSQYDADSNTADAGYASDDVVHASGRTRERKRGVPWTEEEHRLFLLGLHKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHNQNRRRRRSSLFDITTDTVMESSTIMEEEQVQQETAAAPIPAAYPPSHYGCFPGAGFPMSLSPVVLPATGERLAKPIRPTPILPVPPSSKMASLNLKEKASPTNLIEPLPLSLNLPSPTPRSQDQSPANSDHSSPSSSSSTFQAISAGKFSGGGDSIISVA 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01112 303 SMART sant 90 140 IPR001005 -
Viun2g01112 303 MobiDBLite consensus disorder prediction 258 289 - -
Viun2g01112 303 CDD SANT 93 138 IPR001005 -
Viun2g01112 303 FunFam transcription factor MYB1R1 92 143 - -
Viun2g01112 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 142 IPR017930 -
Viun2g01112 303 NCBIfam myb-like DNA-binding domain, SHAQKYF class 89 140 IPR006447 GO:0003677
Viun2g01112 303 ProSiteProfiles SANT domain profile. 89 142 IPR017884 -
Viun2g01112 303 ProSiteProfiles Zinc finger CCHC-type profile. 5 20 IPR001878 GO:0003676|GO:0008270
Viun2g01112 303 SUPERFAMILY Homeodomain-like 88 141 IPR009057 -
Viun2g01112 303 MobiDBLite consensus disorder prediction 1 21 - -
Viun2g01112 303 MobiDBLite consensus disorder prediction 1 26 - -
Viun2g01112 303 Gene3D - 92 143 - -
Viun2g01112 303 PANTHER TRANSCRIPTION FACTOR KUA1 1 255 - -
Viun2g01112 303 MobiDBLite consensus disorder prediction 243 303 - -
Viun2g01112 303 Pfam Myb-like DNA-binding domain 93 138 IPR001005 -
Viun2g01112 303 ProSiteProfiles Myb-like domain profile. 86 138 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01112 Viun-Chr2 21943687 21945666 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun2g01112 Myb_DNA-binding 3.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01112 - - var:108322503 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01112 2 21943687 21945666 Viun2g01112 2 21943687 21945666 ECH
Viun2g01112 2 21943687 21945666 Viun2g01112 2 21943687 21945666 PCT