Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01105 ATGGATCCGGCCGCCATCATCAACGCCGCCGCCGCCAACACAACGTCCTACAACCTCTCGGAGATCTGGCAGTTCCCGCCTCCCCACGCGCCAGACGCTACTGCCGCGCTGGGCCTCAGTAGGGCTCATTTCGGGCACGGCCTGGGCCCGGGTAGCATTGGCCACAAAAAGAGGCGCGACGCCGAGGAGGAGGAATCCGCTAAGGGCGTCTCCACCAGCAATGGCGTGAAGGAGGGTGGTGGTGGTGGTGATGGGAAACGGGTTAAAACAACAGGGAACCAGAAGAGTGAGAGTGCGAAAGGTGAAGGAGAAAGCAGTTCAGGAAAGCTTGCGGAGCAAGGTGGAAAGCCACCTTCAGAGCCTCCTTCAAAGCAAGATTACATTCATGTCCGAGCCAGAAGGGGTCAAGCTACTGATAGCCACAGTCTCGCAGAAAGGGCTAGACGGGAAAAGATTAGTGAGAGGATGAAAATTCTTCAGGATTTGGTCCCGGGTTGTAATAAGGTTATTGGGAAAGCGTTGGTTCTTGATGAGATAATTAATTATATCCAATCGCTTCAGCGGCAAGTAGAGTTTTTGTCCATGAAGCTTGAGGCCGTAAATTCAAGAATACCCTCCGGAATTGAAGTGTTTCCTCCTAAAGATTTTGATCAGCAAACATTTGATACAACTGGCATCGCATTCGCTTCTCAACCTACAAGAGAGTATAGCCGAGGTTCATCACCAGAGTGGTTACATATGCAGGTGGGAACTGGTTTTGAAAGAGCAACATAG 774 0.5142 MDPAAIINAAAANTTSYNLSEIWQFPPPHAPDATAALGLSRAHFGHGLGPGSIGHKKRRDAEEEESAKGVSTSNGVKEGGGGGDGKRVKTTGNQKSESAKGEGESSSGKLAEQGGKPPSEPPSKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRIPSGIEVFPPKDFDQQTFDTTGIAFASQPTREYSRGSSPEWLHMQVGTGFERAT 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01105 257 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 134 204 IPR036638 GO:0046983
Viun2g01105 257 MobiDBLite consensus disorder prediction 29 125 - -
Viun2g01105 257 SMART finulus 142 192 IPR011598 GO:0046983
Viun2g01105 257 MobiDBLite consensus disorder prediction 53 67 - -
Viun2g01105 257 FunFam Basic helix-loop-helix transcription factor 133 205 - -
Viun2g01105 257 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 58 227 IPR024097 GO:0006355
Viun2g01105 257 CDD bHLH_AtBPE_like 126 211 - -
Viun2g01105 257 Pfam Helix-loop-helix DNA-binding domain 140 187 IPR011598 GO:0046983
Viun2g01105 257 Gene3D - 133 206 IPR036638 GO:0046983
Viun2g01105 257 Coils Coil 183 203 - -
Viun2g01105 257 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 186 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01105 Viun-Chr2 21872781 21876386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01105 1 241 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 52.045 9.05e-67 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun2g01105 HLH 2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01105 - - gmx:100794893 371.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01105 2 21872781 21876386 Viun2g01105 2 21872781 21876386 ECH
Viun2g01105 2 21872781 21876386 Viun2g01105 2 21872781 21876386 PCT