Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01090 ATGTCTTCCTCCATCGTCATCATTTTCCTCTTCCTCTCCCTCTTCAGACCCTGCAACACTCAAACATGCTCTTCCAATAACACAAACCCGTGTCCTCCGTTCTCCTCTCACCCTCCTTTCCCTTTCTCCTCCACACCAGGCTGTGGCCACCCCTCCTTCCACATAACCTGTTCCAGCCCCCATTCTTTCATCTCCATCAACAACCTCTCCTTCTCCATACTCTCCTACAACTCCAACACCTCCTCCATAACCCTCTCCCCTCGCCCTAACCCAACGCCCCACCCCAACTGTCCCTCCTTCTCCTTCATTCCTACCCGCCCCATCAACCTCTCCGCCACCCCCTTTCGTGTCTCAGCCGCCACGTGCTCCCGCCTCTCCTTCCTCCGCCCCTGCTCGCCGCCTTCCCTCCCCAACTGCTCCCACTGCCCCTCCCAGTGCCACCTCATCAAATCTCCCTCCCACCTTCTCCCTGACTGCAGATCCACCCACCACTCCCCTCAGTACTCAGACTCCCCCTGCCTCACCGACATCCTCGGCTTCCTCCAACAGTTCCTCAAGAACGGAATCCAACTCGACTGGGACCAGAGCCGTGACCCCTACTTCACTAATTGCACCATCTGCCGCGCCAACAACAGCACCTGCGGCTTCAACTCCTCCTCCCAGAACAAACCGTTCCTCTGCTTCGGCTACCGCTCCCAATCCACCCTCGCCCCACCATGGATTCGCAAATTCAAACCGAACAAAATGGCCCTTTTCAGCACCGTCATCGCCATCACCTCCCTGCTTCTCCTCATCTCAGTAGCCACCGCCATCCTCCGCTCTGCCAGATCAAAGGCCTCCTCCGCCGCCACGCAGCAAGACCCCACCACGCTCTTCCTCCGCCTCCACCGCTCTGCCAGTCTACTGCCCCCGGTCTTCTCCTACGACGACCTCGCTGCTGCTACCCACAACTTCGACCCCAAGCGGAAAATCGGCGACGGCGGGTTTGGGTCCGTCTACCTCGCGCAGCTCCGCGACGGCCGCCTCGCGGCGGTGAAGTACCTCCACCGCCACCACTCCTCCGCTGCGTTCTCTACCAAGTCCTTCTGTAACGAGATCCTCATCCTCTCCTCGATCCACCACGCGAACCTGGTGAAGCTCCACGGTTACTGCAGCGACCCGAGGGGGCTTCTCCTGGTCTACGATTACATCCCCAACGGAACCCTGGCGGAGCATTTGCACCACCGCAAAGGATCTCTGACGTGGCAGGTGAGGCTCGACATCGCGCTACAAACGGCGTTAGCGATGGAGTATCTTCATTTCTCGGTGGTTCCACCGGTCGTCCACAGAGACATCACGTCGTCGAATATTTTCGTGGAGAGGGATATGAGGATCAAGGTGGGAGATTTCGGGTTGTCGCGGCTTTTGGTGGTGCAGGACACGACGTCGTCTTCGAACGGGTTTGTTTGGACCGGGCCGCAAGGAACACCGGGCTATCTTGATCCAGATTACCACCGCTCGTTCCGGTTGACCGAGAAAAGCGACGTGTACAGTTTCGGAGTTGTGTTGTTAGAGCTTATATCGGGAATGAAAGCGGTGGACCAGAGCAGAGACAAGCGCGAAATGGCGCTTGCGGATTTGGTTGTTTCCAGGATCCAGATGGGGCAACTTCACCAGGTTCTGGATCCGGTTTTTAAACGCGGCGACAGCGACGGCGTCTCCGCCGTCGCGGAACTTGCATTCCGCTGCGTGGCGGCGGATAAGGACGACCGGCCGGATTCAAGGGAGGTGGTGGAGGAGCTGCGGCGGGTGCGGAGTCGGACGGTGGCGGCGAAGGAGTGA 1821 0.5898 MSSSIVIIFLFLSLFRPCNTQTCSSNNTNPCPPFSSHPPFPFSSTPGCGHPSFHITCSSPHSFISINNLSFSILSYNSNTSSITLSPRPNPTPHPNCPSFSFIPTRPINLSATPFRVSAATCSRLSFLRPCSPPSLPNCSHCPSQCHLIKSPSHLLPDCRSTHHSPQYSDSPCLTDILGFLQQFLKNGIQLDWDQSRDPYFTNCTICRANNSTCGFNSSSQNKPFLCFGYRSQSTLAPPWIRKFKPNKMALFSTVIAITSLLLLISVATAILRSARSKASSAATQQDPTTLFLRLHRSASLLPPVFSYDDLAAATHNFDPKRKIGDGGFGSVYLAQLRDGRLAAVKYLHRHHSSAAFSTKSFCNEILILSSIHHANLVKLHGYCSDPRGLLLVYDYIPNGTLAEHLHHRKGSLTWQVRLDIALQTALAMEYLHFSVVPPVVHRDITSSNIFVERDMRIKVGDFGLSRLLVVQDTTSSSNGFVWTGPQGTPGYLDPDYHRSFRLTEKSDVYSFGVVLLELISGMKAVDQSRDKREMALADLVVSRIQMGQLHQVLDPVFKRGDSDGVSAVAELAFRCVAADKDDRPDSREVVEELRRVRSRTVAAKE 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01090 606 Gene3D Phosphorylase Kinase; domain 1 296 396 - -
Viun2g01090 606 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 4 601 IPR044652 GO:0004672
Viun2g01090 606 FunFam LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.5 397 606 - -
Viun2g01090 606 ProSitePatterns Tyrosine protein kinases specific active-site signature. 440 452 IPR008266 GO:0004672|GO:0006468
Viun2g01090 606 Gene3D Transferase(Phosphotransferase) domain 1 397 606 - -
Viun2g01090 606 Pfam Protein tyrosine and serine/threonine kinase 321 594 IPR001245 GO:0004672|GO:0006468
Viun2g01090 606 FunFam Putative serine/threonine-protein kinase At1g18390 family 294 396 - -
Viun2g01090 606 ProSiteProfiles Protein kinase domain profile. 318 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01090 606 SUPERFAMILY Protein kinase-like (PK-like) 304 597 IPR011009 -
Viun2g01090 606 ProSitePatterns Protein kinases ATP-binding region signature. 324 346 IPR017441 GO:0005524
Viun2g01090 606 CDD STKc_IRAK 324 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01090 Viun-Chr2 21744803 21747243 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01090 31 606 Receptor kinase-like Gene Family AT1G69910 61.937 0.0 713
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Viun2g01090 PK_Tyr_Ser-Thr 4.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01090 - - gmx:100816739 893.264