Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01068 ATGCTGATGGACCTGTGTGCCCAAATCCAGAGATCATTCGACCAACTTTACACGTGCCACGCGCGCCACTCGCTCGACGAATTGCCTGACAGCTTCACCATCACCGACCCCCACATCCCGGGCCACCCTATCGTTTTCGCAAGCCCGGGCTTCCTCAAGCTCACGGGCTACGCGCGCTGCGAGGTCCTCGGACAGACCGCCGCCGTCTTCCAGGGCCCGGGCACTTCCCGGAGGTCCGTCATGGAAATCCGCGAGGCCGTCCGAGAGGAGCGCACCGCGCAGGTCGTTTTGCTCAACTACCGCAAGGACGGCACGCCGTTTTGGATGCTATTTCGCGTCTCTCCCGTGTTCAGCGGCGACGGCGGCGCCGTCGTTCACTTCGTCGCTGTTCAGGTCCCGCTTCACAAAAAGGACGGCTCCGGCGTCAGGGATTTCGGCTTCGGGTGCTGCCGGAAGGAAGTGTGCACTGATTCGTTATCGGAGCTTGGTCGCGTGTGTTCCGTGGAGCAAGTGTTGGAACGTGATGTCATTGAATTGGAGAGTGAAGAACCGTGTGAGGCAAGTGAGGAGGAGATGCGAAGTGCCGTCACTGCCATGGACAATATCTTCTCCGTGCTAACCCATTTTAGTGAGGCGACTGGCAGATTAGTGTGTAGAAAGAGGTGCAGCATTCCTGACGTGGGTCTTTTAAGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCCCATTTACCGGACATGCCTATTGTTTATGCCAGTGATGCCTTCTTGGAATTGACAGGTTATGGAAGAAATGAAGTTTTGGGTCGCAACTGTAGGTTTTTAGGTGGAACAGATACTGATACCTCTACTTTATATCTGATAAAGGAAAGCATTAAAGCTGAACAACCATGCACAGAAGGACGAAAGTTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGA 972 0.5278 MLMDLCAQIQRSFDQLYTCHARHSLDELPDSFTITDPHIPGHPIVFASPGFLKLTGYARCEVLGQTAAVFQGPGTSRRSVMEIREAVREERTAQVVLLNYRKDGTPFWMLFRVSPVFSGDGGAVVHFVAVQVPLHKKDGSGVRDFGFGCCRKEVCTDSLSELGRVCSVEQVLERDVIELESEEPCEASEEEMRSAVTAMDNIFSVLTHFSEATGRLVCRKRCSIPDVGLLSTSLIISLGRIKQSFVLTNPHLPDMPIVYASDAFLELTGYGRNEVLGRNCRFLGGTDTDTSTLYLIKESIKAEQPCTEGRKFILEFSSYLTRS 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01068 323 ProSiteProfiles PAS repeat profile. 257 279 IPR000014 -
Viun2g01068 323 Pfam PAS domain 30 131 IPR000014 -
Viun2g01068 323 Pfam PAS domain 244 301 IPR000014 -
Viun2g01068 323 Gene3D PAS domain 19 138 - -
Viun2g01068 323 SUPERFAMILY PYP-like sensor domain (PAS domain) 247 307 IPR035965 -
Viun2g01068 323 PANTHER PROTEIN TWIN LOV 1 9 308 - -
Viun2g01068 323 SUPERFAMILY PYP-like sensor domain (PAS domain) 29 130 IPR035965 -
Viun2g01068 323 CDD PAS 28 122 IPR000014 -
Viun2g01068 323 ProSiteProfiles PAS repeat profile. 22 90 IPR000014 -
Viun2g01068 323 FunFam Protein TWIN LOV 1 isoform D 31 208 - -
Viun2g01068 323 CDD PAS 253 283 IPR000014 -
Viun2g01068 323 Gene3D PAS domain 244 312 - -
Viun2g01068 323 SMART pac_2 94 137 IPR001610 -
Viun2g01068 323 NCBIfam PAS domain S-box protein 43 125 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01068 Viun-Chr2 21418461 21422834 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01068 22 312 AGC Kinase Gene Family AT5G58140 31.014 2.65e-44 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01068 - - gmx:100785562 508.834