Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01067 ATGCTGATGGACCTGTGTGCCCAAATCCAGAGATCATTCGACCAACTTTACACGTGCCACGCGCGCCACTCGCTCGACGAATTGCCTGACAGCTTCACCATCACCGACCCCCACATCCCGGGCCACCCTATCGTTTTCGCAAGCCCGGGCTTCCTCAAGCTCACGGGCTACGCGCGCTGCGAGGTCCTCGGACAGACCGCCGCCGTCTTCCAGGGCCCGGGCACTTCCCGGAGGTCCGTCATGGAAATCCGCGAGGCCGTCCGAGAGGAGCGCACCGCGCAGGTCGTTTTGCTCAACTACCGCAAGGACGGCACGCCGTTTTGGATGCTATTTCGCGTCTCTCCCGTGTTCAGCGGCGACGGCGGCGCCGTCGTTCACTTCGTCGCTGTTCAGGTCCCGCTTCACAAAAAGGACGGCTCCGGCGTCAGGGATTTCGGCTTCGGGTGCTGCCGGAAGGAAGTGTGCACTGATTCGTTATCGGAGCTTGGTCGCGTGTGTTCCGTGGAGCAAGTGTTGGAACGTGATGTCATTGAATTGGAGAGTGAAGAACCGTGTGAGGCAAGTGAGGAGGAGATGCGAAGTGCCGTCACTGCCATGGACAATATCTTCTCCGTGCTAACCCATTTTAGTGAGGCGACTGGCAGATTAGTGTGTAGAAAGAGAACTAATCCCCATTTACCGGACATGCCTATTGTTTATGCCAGTGATGCCTTCTTGGAATTGACAGGTTATGGAAGAAATGAAGTTTTGGGTCGCAACTGTAGGTTTTTAGGTGGAACAGATACTGATACCTCTACTTTATATCTGATAAAGGAAAGCATTAAAGCTGAACAACCATGCACAGTACGTATTTTGAATTACAGGAAGGACGAAAGTTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGGTTGCATATTTTGTGGGAGTTCAAATAGAAGAGAGCAATAAAAATGACGATAGACAGTGTTTGAGTCCAGAGAAAAGGCAGCTTAGTGTGGTTGGTGTAGTCAAGGTTGCAGTGAGGAGTTTATCAATGAGTGCGGGATCTTCGAAGTCGTAG 1080 0.5194 MLMDLCAQIQRSFDQLYTCHARHSLDELPDSFTITDPHIPGHPIVFASPGFLKLTGYARCEVLGQTAAVFQGPGTSRRSVMEIREAVREERTAQVVLLNYRKDGTPFWMLFRVSPVFSGDGGAVVHFVAVQVPLHKKDGSGVRDFGFGCCRKEVCTDSLSELGRVCSVEQVLERDVIELESEEPCEASEEEMRSAVTAMDNIFSVLTHFSEATGRLVCRKRTNPHLPDMPIVYASDAFLELTGYGRNEVLGRNCRFLGGTDTDTSTLYLIKESIKAEQPCTVRILNYRKDESSFWNFLHISPVRDASGKVAYFVGVQIEESNKNDDRQCLSPEKRQLSVVGVVKVAVRSLSMSAGSSKS 359
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01067 359 Pfam PAS domain 30 131 IPR000014 -
Viun2g01067 359 Pfam PAS domain 227 317 IPR000014 -
Viun2g01067 359 CDD PAS 227 316 IPR000014 -
Viun2g01067 359 Gene3D PAS domain 221 357 - -
Viun2g01067 359 Gene3D PAS domain 19 138 - -
Viun2g01067 359 ProSiteProfiles PAS repeat profile. 231 253 IPR000014 -
Viun2g01067 359 SUPERFAMILY PYP-like sensor domain (PAS domain) 29 130 IPR035965 -
Viun2g01067 359 ProSiteProfiles PAC domain profile. 278 332 IPR000700 -
Viun2g01067 359 SMART pac_2 94 137 IPR001610 -
Viun2g01067 359 SMART pac_2 281 323 IPR001610 -
Viun2g01067 359 PANTHER PROTEIN TWIN LOV 1 222 349 - -
Viun2g01067 359 CDD PAS 28 122 IPR000014 -
Viun2g01067 359 ProSiteProfiles PAS repeat profile. 22 90 IPR000014 -
Viun2g01067 359 SUPERFAMILY PYP-like sensor domain (PAS domain) 227 317 IPR035965 -
Viun2g01067 359 FunFam protein TWIN LOV 1 220 354 - -
Viun2g01067 359 FunFam Protein TWIN LOV 1 isoform D 31 208 - -
Viun2g01067 359 NCBIfam PAS domain S-box protein 43 125 IPR000014 -
Viun2g01067 359 NCBIfam PAS domain S-box protein 231 316 IPR000014 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Viun2g01067 Viun-Chr2 21418461 21422892 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01067 222 350 AGC Kinase Gene Family AT5G58140 41.860 3.36e-32 125
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01067 - - gmx:100799855 586.645