Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Viun2g01067 | ATGCTGATGGACCTGTGTGCCCAAATCCAGAGATCATTCGACCAACTTTACACGTGCCACGCGCGCCACTCGCTCGACGAATTGCCTGACAGCTTCACCATCACCGACCCCCACATCCCGGGCCACCCTATCGTTTTCGCAAGCCCGGGCTTCCTCAAGCTCACGGGCTACGCGCGCTGCGAGGTCCTCGGACAGACCGCCGCCGTCTTCCAGGGCCCGGGCACTTCCCGGAGGTCCGTCATGGAAATCCGCGAGGCCGTCCGAGAGGAGCGCACCGCGCAGGTCGTTTTGCTCAACTACCGCAAGGACGGCACGCCGTTTTGGATGCTATTTCGCGTCTCTCCCGTGTTCAGCGGCGACGGCGGCGCCGTCGTTCACTTCGTCGCTGTTCAGGTCCCGCTTCACAAAAAGGACGGCTCCGGCGTCAGGGATTTCGGCTTCGGGTGCTGCCGGAAGGAAGTGTGCACTGATTCGTTATCGGAGCTTGGTCGCGTGTGTTCCGTGGAGCAAGTGTTGGAACGTGATGTCATTGAATTGGAGAGTGAAGAACCGTGTGAGGCAAGTGAGGAGGAGATGCGAAGTGCCGTCACTGCCATGGACAATATCTTCTCCGTGCTAACCCATTTTAGTGAGGCGACTGGCAGATTAGTGTGTAGAAAGAGAACTAATCCCCATTTACCGGACATGCCTATTGTTTATGCCAGTGATGCCTTCTTGGAATTGACAGGTTATGGAAGAAATGAAGTTTTGGGTCGCAACTGTAGGTTTTTAGGTGGAACAGATACTGATACCTCTACTTTATATCTGATAAAGGAAAGCATTAAAGCTGAACAACCATGCACAGTACGTATTTTGAATTACAGGAAGGACGAAAGTTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGGTTGCATATTTTGTGGGAGTTCAAATAGAAGAGAGCAATAAAAATGACGATAGACAGTGTTTGAGTCCAGAGAAAAGGCAGCTTAGTGTGGTTGGTGTAGTCAAGGTTGCAGTGAGGAGTTTATCAATGAGTGCGGGATCTTCGAAGTCGTAG | 1080 | 0.5194 | MLMDLCAQIQRSFDQLYTCHARHSLDELPDSFTITDPHIPGHPIVFASPGFLKLTGYARCEVLGQTAAVFQGPGTSRRSVMEIREAVREERTAQVVLLNYRKDGTPFWMLFRVSPVFSGDGGAVVHFVAVQVPLHKKDGSGVRDFGFGCCRKEVCTDSLSELGRVCSVEQVLERDVIELESEEPCEASEEEMRSAVTAMDNIFSVLTHFSEATGRLVCRKRTNPHLPDMPIVYASDAFLELTGYGRNEVLGRNCRFLGGTDTDTSTLYLIKESIKAEQPCTVRILNYRKDESSFWNFLHISPVRDASGKVAYFVGVQIEESNKNDDRQCLSPEKRQLSVVGVVKVAVRSLSMSAGSSKS | 359 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Viun2g01067 | 359 | Pfam | PAS domain | 30 | 131 | IPR000014 | - | |
| Viun2g01067 | 359 | Pfam | PAS domain | 227 | 317 | IPR000014 | - | |
| Viun2g01067 | 359 | CDD | PAS | 227 | 316 | IPR000014 | - | |
| Viun2g01067 | 359 | Gene3D | PAS domain | 221 | 357 | - | - | |
| Viun2g01067 | 359 | Gene3D | PAS domain | 19 | 138 | - | - | |
| Viun2g01067 | 359 | ProSiteProfiles | PAS repeat profile. | 231 | 253 | IPR000014 | - | |
| Viun2g01067 | 359 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 29 | 130 | IPR035965 | - | |
| Viun2g01067 | 359 | ProSiteProfiles | PAC domain profile. | 278 | 332 | IPR000700 | - | |
| Viun2g01067 | 359 | SMART | pac_2 | 94 | 137 | IPR001610 | - | |
| Viun2g01067 | 359 | SMART | pac_2 | 281 | 323 | IPR001610 | - | |
| Viun2g01067 | 359 | PANTHER | PROTEIN TWIN LOV 1 | 222 | 349 | - | - | |
| Viun2g01067 | 359 | CDD | PAS | 28 | 122 | IPR000014 | - | |
| Viun2g01067 | 359 | ProSiteProfiles | PAS repeat profile. | 22 | 90 | IPR000014 | - | |
| Viun2g01067 | 359 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 227 | 317 | IPR035965 | - | |
| Viun2g01067 | 359 | FunFam | protein TWIN LOV 1 | 220 | 354 | - | - | |
| Viun2g01067 | 359 | FunFam | Protein TWIN LOV 1 isoform D | 31 | 208 | - | - | |
| Viun2g01067 | 359 | NCBIfam | PAS domain S-box protein | 43 | 125 | IPR000014 | - | |
| Viun2g01067 | 359 | NCBIfam | PAS domain S-box protein | 231 | 316 | IPR000014 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Viun2g01067 | Viun-Chr2 | 21418461 | 21422892 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Viun2g01067 | 222 | 350 | AGC Kinase Gene Family | AT5G58140 | 41.860 | 3.36e-32 | 125 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Viun2g01067 | - | - | gmx:100799855 | 586.645 |