Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01066 ATGCTGATGGACCTGTGTGCCCAAATCCAGAGATCATTCGACCAACTTTACACGTGCCACGCGCGCCACTCGCTCGACGAATTGCCTGACAGCTTCACCATCACCGACCCCCACATCCCGGGCCACCCTATCGTTTTCGCAAGCCCGGGCTTCCTCAAGCTCACGGGCTACGCGCGCTGCGAGGTCCTCGGACAGACCGCCGCCGTCTTCCAGGGCCCGGGCACTTCCCGGAGGTCCGTCATGGAAATCCGCGAGGCCGTCCGAGAGGAGCGCACCGCGCAGGTCGTTTTGCTCAACTACCGCAAGGACGGCACGCCGTTTTGGATGCTATTTCGCGTCTCTCCCGTGTTCAGCGGCGACGGCGGCGCCGTCGTTCACTTCGTCGCTGTTCAGGTCCCGCTTCACAAAAAGGACGGCTCCGGCGTCAGGGATTTCGGCTTCGGGTGCTGCCGGAAGGAAGTGTGCACTGATTCGTTATCGGAGCTTGGTCGCGTGTGTTCCGTGGAGCAAGTGTTGGAACGTGATGTCATTGAATTGGAGAGTGAAGAACCGTGTGAGGCAAGTGAGGAGGAGATGCGAAGTGCCGTCACTGCCATGGACAATATCTTCTCCGTGCTAACCCATTTTAGTGAGGCGACTGGCAGATTAGTGTGTAGAAAGAGGTGCAGCATTCCTGACGTGGGTCTTTTAAGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCCCATTTACCGGACATGCCTATTGTTTATGCCAGTGATGCCTTCTTGGAATTGACAGGTTATGGAAGAAATGAAGTTTTGGGTCGCAACTGTAGGTTTTTAGGTGGAACAGATACTGATACCTCTACTTTATATCTGATAAAGGAAAGCATTAAAGCTGAACAACCATGCACAGTACGTATTTTGAATTACAGGAAGGACGAAAGTTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGGTTGCATATTTTGTGGGAGTTCAAATAGAAGAGAGCAATAAAAATGACGATAGACAGTGTTTGAGTCCAGAGAAAAGGCAGCTTAGTGTGGTTGGTGTAGTCAAGGTTGCAGTGAGGAGTTTATCAATGAGTGCGGGATCTTCGAAGTCGTAG 1158 0.5104 MLMDLCAQIQRSFDQLYTCHARHSLDELPDSFTITDPHIPGHPIVFASPGFLKLTGYARCEVLGQTAAVFQGPGTSRRSVMEIREAVREERTAQVVLLNYRKDGTPFWMLFRVSPVFSGDGGAVVHFVAVQVPLHKKDGSGVRDFGFGCCRKEVCTDSLSELGRVCSVEQVLERDVIELESEEPCEASEEEMRSAVTAMDNIFSVLTHFSEATGRLVCRKRCSIPDVGLLSTSLIISLGRIKQSFVLTNPHLPDMPIVYASDAFLELTGYGRNEVLGRNCRFLGGTDTDTSTLYLIKESIKAEQPCTVRILNYRKDESSFWNFLHISPVRDASGKVAYFVGVQIEESNKNDDRQCLSPEKRQLSVVGVVKVAVRSLSMSAGSSKS 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01066 385 ProSiteProfiles PAS repeat profile. 257 279 IPR000014 -
Viun2g01066 385 FunFam Protein TWIN LOV 1 isoform D 31 208 - -
Viun2g01066 385 FunFam protein TWIN LOV 1 244 380 - -
Viun2g01066 385 Gene3D PAS domain 19 138 - -
Viun2g01066 385 SMART pac_2 307 349 IPR001610 -
Viun2g01066 385 SMART pac_2 94 137 IPR001610 -
Viun2g01066 385 SUPERFAMILY PYP-like sensor domain (PAS domain) 29 130 IPR035965 -
Viun2g01066 385 SUPERFAMILY PYP-like sensor domain (PAS domain) 247 343 IPR035965 -
Viun2g01066 385 NCBIfam PAS domain S-box protein 257 342 IPR000014 -
Viun2g01066 385 NCBIfam PAS domain S-box protein 43 125 IPR000014 -
Viun2g01066 385 Gene3D PAS domain 244 383 - -
Viun2g01066 385 CDD PAS 28 122 IPR000014 -
Viun2g01066 385 PANTHER PROTEIN TWIN LOV 1 9 375 - -
Viun2g01066 385 ProSiteProfiles PAS repeat profile. 22 90 IPR000014 -
Viun2g01066 385 ProSiteProfiles PAC domain profile. 304 358 IPR000700 -
Viun2g01066 385 CDD PAS 253 342 IPR000014 -
Viun2g01066 385 Pfam PAS domain 30 131 IPR000014 -
Viun2g01066 385 Pfam PAS domain 244 343 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01066 Viun-Chr2 21418461 21422892 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01066 22 376 AGC Kinase Gene Family AT5G58140 31.421 7.30e-61 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01066 - - gmx:100785562 644.425