Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01058 ATGGGTTTGGGTGCTGAGAATGGTAAGGTGGTGGAGCCTTGGGATGTGTGCAAATCAAAGGGGAGAAAGAAGAAGAAAGGGAATGAAGAAGTAGAAGGGGCTGGGTCTGGTTGTTGGTTTAGGCTCAGGTTTATGGGCAGCTGCATTTCCTCAAGATCCAAGGTCGATACCTCGGTCAGTGGCAGTGGCACCAGTACTCATTATGCTGAAAGTAAATCAACTAATGATACTAGTAGAGACCAACCAACAGCTCCGGCAGTCTCTTCTACAACCACTAGTATCGCAGAAAGTAATTCATCCACTTCCAAACTTGAAGAGGAGCTTAAAATTGCTTCCAGGCTGCGAAAGTTTTCTTTCAATGATCTTAAGTTAGCTACCAGAAATTTTCGGCCTGAAAGTTTTCTTGGTGAAGGTGGGTTTGGTTGTGTTTTCAAGGGTTGGATTGAAGAAAATGGAACTGCTCCAGTGAAACCTGGCACAGGGCTTACAGTTGCTGTAAAAACCCTCAACCATGATGGGCTCCAGGGTCATAAAGAGTGGCTGGCTGAAGTAAATTTTCTCGGCGATCTAGTTCATCCGAACCTTGTTAAACTTGTAGGTTACTGCATTGAAGATGATCAAAGGTTGCTAGTGTACGAGTTCATGCCTCGGGGTAGCCTAGAAAATCATTTGTTTAGGAGATCGCTGCCTCTTCCATGGTCCATTAGAATGAAAATAGCCCTTGGAGCTGCCAAGGGTCTTGCTTTTCTTCATGAAGAAGCCGATCGACCAGTAATATATAGGGATTTCAAAACTTCAAATATACTATTAGATGCAGAGTACAACGCCAAGCTCTCAGACTTTGGTCTTGCCAAAGATGGTCCAGAAGGTGATAAAACCCATGTGTCTACTCGAGTGATGGGAACCTATGGCTATGCAGCACCAGAATATGTCATGACCGGTCATCTTACATCAAAAAGTGATGTGTACAGTTTCGGAGTGGTACTACTAGAGATGTTGACTGGGAGAAGATCGATGGACAAACACAGACCCAATGGTGAGCATAACCTTGTGGAATGGGCTCGGCCGCATCTAGGAGAGAGGAGAAGGTTCTACAAGTTGATAGACCCTCGTTTGGAAGGCCACTTTTCGGTGAAAGGTGCTCAGAAAGCTGCCCAACTAGCTGCTCACTGCCTTTGTAGAGATCCAAAAGCCAGGCCTCTCATGAGTGAAGTTGTTGAAGCTTTGAAGCCTTTGCCAAACCTCAAGGACATGGCAAGCTCTTCATATTATTACCAGACCATGCAAGCCGACCGCATCGCAGCCAGCCCCAACACAAGAAACGGACGAACACAAGGACCATTGCTCACCCGCAATGGACACCAGCAAAGGAGTCTTTCCATACCAAACGGAGCCTATGCTTCTCCTTATCACCATCAGTTTCCTCAACCATCCCCCAAGACCAATGGCAAAGCATAG 1458 0.4616 MGLGAENGKVVEPWDVCKSKGRKKKKGNEEVEGAGSGCWFRLRFMGSCISSRSKVDTSVSGSGTSTHYAESKSTNDTSRDQPTAPAVSSTTTSIAESNSSTSKLEEELKIASRLRKFSFNDLKLATRNFRPESFLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLVHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHEEADRPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKHRPNGEHNLVEWARPHLGERRRFYKLIDPRLEGHFSVKGAQKAAQLAAHCLCRDPKARPLMSEVVEALKPLPNLKDMASSSYYYQTMQADRIAASPNTRNGRTQGPLLTRNGHQQRSLSIPNGAYASPYHHQFPQPSPKTNGKA 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01058 485 CDD STKc_IRAK 135 412 - -
Viun2g01058 485 SUPERFAMILY Protein kinase-like (PK-like) 115 429 IPR011009 -
Viun2g01058 485 MobiDBLite consensus disorder prediction 434 485 - -
Viun2g01058 485 PANTHER OS01G0588500 PROTEIN-RELATED 89 412 - -
Viun2g01058 485 Gene3D Transferase(Phosphotransferase) domain 1 215 432 - -
Viun2g01058 485 MobiDBLite consensus disorder prediction 434 463 - -
Viun2g01058 485 MobiDBLite consensus disorder prediction 53 100 - -
Viun2g01058 485 Gene3D Phosphorylase Kinase; domain 1 88 214 - -
Viun2g01058 485 FunFam Probable serine/threonine-protein kinase PBL8 215 430 - -
Viun2g01058 485 FunFam Serine/threonine-protein kinase BIK1 96 214 - -
Viun2g01058 485 ProSiteProfiles Protein kinase domain profile. 129 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01058 485 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Viun2g01058 485 Pfam Protein tyrosine and serine/threonine kinase 134 409 IPR001245 GO:0004672|GO:0006468
Viun2g01058 485 ProSitePatterns Protein kinases ATP-binding region signature. 135 167 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01058 Viun-Chr2 21381680 21385870 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01058 76 440 Glycoside Hydrolase AT3G07070 50.532 8.56e-118 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Viun2g01058 PK_Tyr_Ser-Thr 3.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01058 - - gmx:100305443 891.723