Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01051 ATGACTAAATTATACACCATTTTGTTTTTAACCTGTTTGGTAGTGAACATACCTACTTTATATGGCAATGTGTTAGAGGATGAGGAGTTCTGGGAGAAGCAAGCTAATTCATTTGATGATTATTGGAAGAAAAGAGAAGCAAGTGCTGAACAAGAGAACAAGAAAGCTTATATTGATGACCCATTTTCATTCACCGGCAACGTGACTGATAATATTACTGACCTGATAGTTAGTGATGAAAAAGAGGAAAAAAAGGGAAGGAAGTTGGCAGGAAAGTTAGCAAATTCTGCATGCGTGGCAACAAACCCGATTGACAGATGTTGGAGGTGTGACAAGGACTGGGAAAAGAATCGAAAAAAGTTGGCAGATTGTGTGCTAGGTTTTGGCAGAAACACTGTTGGGGGAAAGAATGGTTCGTTTTACAAGGTAACCAGTAACTTGGATAATGACATGGTGAATCCTGTTCCTGGTACTCTTAGGTATGCGGTTACAAGAACAGCACCATTGTGGATCTATTTTTCTCGAAGCATGACCATTAGGCTGAACCAGGAGCTGATTGTGGCAAGTAACAAGACCATTGATGGAAGAGGAGTTGATGTCTACATTGTGAATGGGGCTGGTTTTACCCTCCAATTCGTCAAGAATGTGATCATTCATGGAATCAAAATTTTTGACATTCAGACTGGAAATGGTGGACTTATCAGAGATTCTGAGACCCACTACGGCCACAGGACTCAGAGTGATGGTGATGGAATTTCCATCTTTGGCTCTAGCCATGTCTGGATTGACCATGTTTCCATGAGAAACTGCCAAGATGGAATGATCGATGCTATTATGGGTTCTACTGCTATTACCATCTCCAATAGCCACTTCACAGATCACAATGAGGTGATGCTGTTTGGTGCGAGTGACAGCCATACTGTGGATAAGGTAATGCAGATCACACTGTTATTCAACCACTTTGGTAAGAGATTAGTGCAAAGGATGCCAAGATGCAGGCATGGTTTTTTTCATGTGGTTAACAACGATTACACTAATTGGGAAATGTATGCCGTTGGTGGTAGCAAGCATCCTACAATTATTAGTGAGGGAAACCGATTTAGAGCCCCTGACGACCACAATGCTAAAGAGATAACAAAGAGGACCTTAACAACACAGGAAGAGTGGAAAAACTGGCAATGGAGATCAATAAGGGATGAGATGGTGAATGGAGCTTATTTCATAGAAAGTGGGCCCGTTCTAACCAACAGGCCCTTCGCAAAGAATGACATGGTGTCCTCCAAACCTGGCTCATATGTGGTAAGGCTCAGTCGCTATGCTGGGGCCCTTAAATGCGTTAAGGGCAAGCCTTGTTAA 1356 0.4233 MTKLYTILFLTCLVVNIPTLYGNVLEDEEFWEKQANSFDDYWKKREASAEQENKKAYIDDPFSFTGNVTDNITDLIVSDEKEEKKGRKLAGKLANSACVATNPIDRCWRCDKDWEKNRKKLADCVLGFGRNTVGGKNGSFYKVTSNLDNDMVNPVPGTLRYAVTRTAPLWIYFSRSMTIRLNQELIVASNKTIDGRGVDVYIVNGAGFTLQFVKNVIIHGIKIFDIQTGNGGLIRDSETHYGHRTQSDGDGISIFGSSHVWIDHVSMRNCQDGMIDAIMGSTAITISNSHFTDHNEVMLFGASDSHTVDKVMQITLLFNHFGKRLVQRMPRCRHGFFHVVNNDYTNWEMYAVGGSKHPTIISEGNRFRAPDDHNAKEITKRTLTTQEEWKNWQWRSIRDEMVNGAYFIESGPVLTNRPFAKNDMVSSKPGSYVVRLSRYAGALKCVKGKPC 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01051 451 SMART amb_all 176 373 IPR002022 -
Viun2g01051 451 PRINTS Pollen allergen Amb family signature 184 200 IPR018082 -
Viun2g01051 451 PRINTS Pollen allergen Amb family signature 422 445 IPR018082 -
Viun2g01051 451 PRINTS Pollen allergen Amb family signature 328 347 IPR018082 -
Viun2g01051 451 PRINTS Pollen allergen Amb family signature 148 173 IPR018082 -
Viun2g01051 451 PRINTS Pollen allergen Amb family signature 248 269 IPR018082 -
Viun2g01051 451 PRINTS Pollen allergen Amb family signature 124 141 IPR018082 -
Viun2g01051 451 PRINTS Pollen allergen Amb family signature 350 369 IPR018082 -
Viun2g01051 451 PRINTS Pollen allergen Amb family signature 392 416 IPR018082 -
Viun2g01051 451 PANTHER PECTATE LYASE 18-RELATED 71 449 IPR045032 GO:0030570
Viun2g01051 451 SUPERFAMILY Pectin lyase-like 102 442 IPR011050 -
Viun2g01051 451 Gene3D - 101 444 IPR012334 -
Viun2g01051 451 Pfam Pectate lyase, N terminus 37 74 IPR007524 GO:0030570
Viun2g01051 451 Pfam Pectate lyase 184 367 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01051 Viun-Chr2 21331409 21334073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01051 7 451 Polysaccharide Lyase AT1G14420 54.048 5.84e-177 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01051 K01728 - gmx:100796307 676.011