Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01047 ATGTCCCACATTGTTCACGCTCACCCCTTAAAACACCTCTCACTACCCTTCCACTCTTTGGTTCCTCCCAAATTCATTGTTCCTTTGAATCGGAACTCTTCTTTCATTTCTCCAACTTCACTCTCTGTCAGATGTAACCACTCCAACCTCATGGAACCATTCCCACCACTGCCACAATATCCTTCAGTTGCAGAATTGCCGCAAAGGGTGTTCGCAGATTACTCCGTTTATACAGCGAGGGGTGTGCTCACCTTGACTCCTAGACCTCCGGATTTTGAATCAAAAGCTTCTGGGGCGTTTGGGGTGTCTAGGGATGGTTATATGTTGCTCCAGTTTGCTCCTTCGGTTGGTACTGAAGAATCCATATATGATTGGAACCAAAAGCAGGTATTCTCACTTTCGGTAAGTGAAATGGGGACTCTAATTAGCCTTGGTGCAATGGAGTCTTGGGAATTTTTTCGTAAGATTTCTAAGGCGAAAAGCAATGGAATTGAAGTCAGAAAAGTTTTGAAGGTGGAACCACTTCTGGATGCTACTGGTCACTCATTTAGCTTAAGTGTTTATAAAAAACCTGCGAACATGGAGGAAATTGAGGAAAACATCTATCTCCCTATTACAAGAGCACAGCTAGCAGTTTTAAGGTCAATTTTCAATTATATCGTGCCGTACCTTCTAGGTTGGAATGCATTTGCAAGCACCATAAAGCCAGAGGTATATAGTCAAGTGAACAGTGCCAACCCCAGATACACTGCAAACAATGAATGGAACAGATAG 774 0.4315 MSHIVHAHPLKHLSLPFHSLVPPKFIVPLNRNSSFISPTSLSVRCNHSNLMEPFPPLPQYPSVAELPQRVFADYSVYTARGVLTLTPRPPDFESKASGAFGVSRDGYMLLQFAPSVGTEESIYDWNQKQVFSLSVSEMGTLISLGAMESWEFFRKISKAKSNGIEVRKVLKVEPLLDATGHSFSLSVYKKPANMEEIEENIYLPITRAQLAVLRSIFNYIVPYLLGWNAFASTIKPEVYSQVNSANPRYTANNEWNR 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01047 257 SUPERFAMILY ssDNA-binding transcriptional regulator domain 68 257 IPR009044 GO:0003677|GO:0006355
Viun2g01047 257 Pfam Whirly transcription factor 76 216 IPR013742 GO:0003697|GO:0006355|GO:0006952
Viun2g01047 257 Gene3D Transcriptional Coactivator Pc4; Chain A 63 245 IPR009044 GO:0003677|GO:0006355
Viun2g01047 257 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 61 257 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01047 Viun-Chr2 21305324 21310213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01047 41 257 Whirly Transcription Factor Family AT1G14410 52.273 7.02e-73 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Viun2g01047 Whirly 1.3e-42 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01047 K26559 - pvu:PHAVU_002G089800g 432.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01047 2 21305324 21310213 Viun2g01047 2 21305324 21310213 ECH