Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01042 ATGGGGAAAGGAAGAAGTCCTGGCAAATGGTTCAAGAACTTACTCTTGGGGAAGAAATCGTCGGCAAAGTCTACTTCATCGAAGAAGAATGATATTTTTAAACCTTCAAGTAATAAGGATGTGGTGGTGTCTTCTGAGGTACCTGTGTCTGATTCACCTGCCAATTCTCTGCTGATATCCTCGCCTATATCTGGAGCTAATGATACCAAAGGAGTACTTTCAGAAAAGGAGGTAGTTAGTAGATCTGCACATGATAATAATGTTCTTTCAACTGGTGAAGAGGCCAAGGTGCAGGATGTTGCTAATTTTGAAACTCAAGAGGATCCTGAGAAACTTAAGCTTACAGAAGCAGCTATAAAAGTTCAGGCCGCTTGTAGAAGCTATCTGGCTCGTCAAACATTTCAAACACTCAAAGGAGCCATACAACTACAAGCTCTCATTCGTGGTCACTTGGTTAGAAGACAAGCTGTTTCTGCTTTATACTGTGTGAAGGGAATAGTTAAATTTCAAGCATTGGCTCGTGGTTACATTGTTAGACGTTCTGATATTGGCCATGCCGTCCAGAAGATTTGTAAGGATACTCATTGTTCAAATTCTATTTCGGTAGTTTCATCAACACGGGAAGAGAAGGTGTCAGAAAATGTCTTTGTTTGCAAGCTTCTGGCTTCATCCCCATATGCAGTTCCTCTATCACTCACCAGTGATCCAGCAGAACCTAACTTTGCTCGGAAGTGGCTTGAATATTGGACACAGTCACACTTTTGGGCACCTCTTCCTGTATTGAGAAAGAAATCTGACTCAGTATCTGATGAGAAAAATAGCAGTTCCCAGACAGTTCAAAGGGGACAAGTTAAAAGAACTACTAGAAAATCTCCTGCTGTGAAAGGTGACAATGGCTCTGTTTTAGCTGCTAACAGATCTAAACAGCGTTCAAAAAAGGATTCAAGCCATCCATTGCCTTCAGCTCAGGAACACCCACAAAAAGAAACTGAAAAAAGTAGTCTTGAGAAAAAACATGCACATGATGTTTCAAATGGATCTGAGGTTGTTAACGAAAAAAGAAAACACAGCAGTAGAAAGATTTTGGATCACACTGTCACCGATGTTTTAGAGCAGGTCCCAAATTCCTCTTCAGAGAAAATGGAAGATTTGACGGTGGCAAAGTCAGAAGAGTCTGATCCTGGGAAGGGTCATGGACAGCCAGCAGAAGATCAGAATGGTAATGAGCCACATAAGGATCCTATTGCTGTTTTAAGGACTAGTGTGAAGAAGGGTGAAAATGGAAAAGTTCAAGGAGTTGGTGAGGATCAGAATGGTGGTGATGATAATTGTATCAGTAACAATTGCCAGAGAAGAGCTTCACTACCTGCAAACTTCAATGATCAAGATAGTGAGTTATATACCACTCCTGTTACTCCAAGGCTTCCCAGTTATATGGCTCCTACGGAATCTGCAAAGGCCAAGCTAAGAGCTCAAAACTCTCCAAGATTTGCTACTGATTTGGTAGAAAAAAGCAGTACAACCAGGCGGCATTCACTTTCCTCCTCACTCAATGGAAAGTCAGGTTCATTTTCCCCGAGAGCTGAAAGGCTGATGGCCGTGAGTGGCAGAGGAGTGATAAAGTCTGATAGATCTCTGTCATCTTCAAGAGATGGAACCGAGAAGTTGATCCAACCTCAGTGGAGAAGGTGA 1692 0.4208 MGKGRSPGKWFKNLLLGKKSSAKSTSSKKNDIFKPSSNKDVVVSSEVPVSDSPANSLLISSPISGANDTKGVLSEKEVVSRSAHDNNVLSTGEEAKVQDVANFETQEDPEKLKLTEAAIKVQAACRSYLARQTFQTLKGAIQLQALIRGHLVRRQAVSALYCVKGIVKFQALARGYIVRRSDIGHAVQKICKDTHCSNSISVVSSTREEKVSENVFVCKLLASSPYAVPLSLTSDPAEPNFARKWLEYWTQSHFWAPLPVLRKKSDSVSDEKNSSSQTVQRGQVKRTTRKSPAVKGDNGSVLAANRSKQRSKKDSSHPLPSAQEHPQKETEKSSLEKKHAHDVSNGSEVVNEKRKHSSRKILDHTVTDVLEQVPNSSSEKMEDLTVAKSEESDPGKGHGQPAEDQNGNEPHKDPIAVLRTSVKKGENGKVQGVGEDQNGGDDNCISNNCQRRASLPANFNDQDSELYTTPVTPRLPSYMAPTESAKAKLRAQNSPRFATDLVEKSSTTRRHSLSSSLNGKSGSFSPRAERLMAVSGRGVIKSDRSLSSSRDGTEKLIQPQWRR 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01042 563 MobiDBLite consensus disorder prediction 498 523 - -
Viun2g01042 563 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 180 IPR027417 -
Viun2g01042 563 ProSiteProfiles IQ motif profile. 138 165 IPR000048 GO:0005515
Viun2g01042 563 MobiDBLite consensus disorder prediction 266 445 - -
Viun2g01042 563 Pfam IQ calmodulin-binding motif 138 155 IPR000048 GO:0005515
Viun2g01042 563 Pfam IQ calmodulin-binding motif 164 180 IPR000048 GO:0005515
Viun2g01042 563 Pfam IQ calmodulin-binding motif 115 135 IPR000048 GO:0005515
Viun2g01042 563 Pfam Protein of unknown function (DUF4005) 462 542 IPR025064 -
Viun2g01042 563 ProSiteProfiles IQ motif profile. 114 142 IPR000048 GO:0005515
Viun2g01042 563 MobiDBLite consensus disorder prediction 487 563 - -
Viun2g01042 563 MobiDBLite consensus disorder prediction 383 398 - -
Viun2g01042 563 MobiDBLite consensus disorder prediction 307 366 - -
Viun2g01042 563 MobiDBLite consensus disorder prediction 271 287 - -
Viun2g01042 563 Gene3D - 112 161 - -
Viun2g01042 563 MobiDBLite consensus disorder prediction 541 555 - -
Viun2g01042 563 PANTHER IQ-DOMAIN 5-RELATED 1 519 - -
Viun2g01042 563 SMART iq_5 161 183 IPR000048 GO:0005515
Viun2g01042 563 SMART iq_5 113 135 IPR000048 GO:0005515
Viun2g01042 563 SMART iq_5 136 157 IPR000048 GO:0005515
Viun2g01042 563 ProSiteProfiles IQ motif profile. 164 189 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01042 Viun-Chr2 21257531 21263032 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01042 4 563 IQD Protein Family AT1G14380 36.645 7.31e-79 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01042 - - gmx:100800548 852.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01042 2 21257531 21263032 Viun2g01042 2 21257531 21263032 ECH
Viun2g01042 2 21257531 21263032 Viun3g04556 3 53217282 53225422 ECH