Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01035 ATGGGTAACTGCCTAGATTCTTCTGCCAAAGTTGATGCAGCTCAGAGCTCCAGATCCACTTCTGGAATCTCAAAAACTACACCTTCGAGCTTATCTATTCCATCATACAGTGAAAAAAGCAACGCCTTAAGTCTTCCGACACCGAGGTCTGAGGGTGAAATCTTGTCTTCTCCAAATCTTAAGTCCTTCACATTCAATGAGCTGAAGAATGCCACCAGAAATTTTCGGCCCGATAGTCTTCTGGGTGAAGGGGGATTTGGATGCGTCTACAAAGGATGGATCGATGAACACACATTTACAGCTTCAAAGCCTGGATCAGGGATGGTCGTTGCTGTAAAGAAGCTCAAACCTGAAGGTTTTCAAGGTCATAAAGAATGGTTGACTGAGGTTAACTACCTTGGACAACTGTACCATCCAAATCTGGTTAAATTAATTGGTTACTGCTTGGAGGGAGAGAATCGGCTATTGGTCTATGAGTTCATGCCGAAAGGGAGCTTAGAGAACCACCTGTTTAGAAGAGGACCACAACCACTCTCTTGGTCAGTGAGGATGAAAGTGGCTATTGGTGCTGCTAGAGGACTCTCTTTTCTTCATAACGCCAAATCACAAGTCATATACCGTGATTTTAAAGCCTCTAACATTCTACTTGATGCGGAGTTCAATGCTAAACTCTCTGACTTTGGTTTAGCCAAGGCGGGTCCTACCGGTGATAGAACTCACGTATCTACTCAAGTCATGGGTACTCAAGGATATGCAGCTCCTGAATATGTTGCAACTGGTAGGTTGACAGCGAAAAGTGATGTGTACAGCTTTGGAGTTGTGTTGCTTGAACTTCTATCCGGAAGAAGAGCTGTGGATAAAACAATAGCTGGTATGGAGCAGAATCTGGTGGACTGGGCAAAACCATATTTGAGCGACAAACGAAGACTGTTCCGGATCATGGACACAAAGTTGGAGGGGCAGTATCCGCAAAAGGGTGCCTTCATGGCTGCCACACTTGCCCTACAATGCCTGAACAGTGAGGCCAAGACAAGGCCTCCAATGACAGAGGTTTTAGCCACTCTGGAACAGATAGAAGCACCCAAAGCTTCTTCCAGAAACTCCCATTCGGAACACCACAGAGTTCACACTCCTGTCAGAAAATCTCCTGCACGCAACAACCGGTCACCGCTAAATCTAACTCCCACTGCGTCCCCTCTTCATGCTCAACGGCAATCGCCTCGTGTGCACTGA 1233 0.4631 MGNCLDSSAKVDAAQSSRSTSGISKTTPSSLSIPSYSEKSNALSLPTPRSEGEILSSPNLKSFTFNELKNATRNFRPDSLLGEGGFGCVYKGWIDEHTFTASKPGSGMVVAVKKLKPEGFQGHKEWLTEVNYLGQLYHPNLVKLIGYCLEGENRLLVYEFMPKGSLENHLFRRGPQPLSWSVRMKVAIGAARGLSFLHNAKSQVIYRDFKASNILLDAEFNAKLSDFGLAKAGPTGDRTHVSTQVMGTQGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDKTIAGMEQNLVDWAKPYLSDKRRLFRIMDTKLEGQYPQKGAFMAATLALQCLNSEAKTRPPMTEVLATLEQIEAPKASSRNSHSEHHRVHTPVRKSPARNNRSPLNLTPTASPLHAQRQSPRVH 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01035 410 FunFam Probable serine/threonine-protein kinase PBL8 161 374 - -
Viun2g01035 410 MobiDBLite consensus disorder prediction 1 53 - -
Viun2g01035 410 CDD STKc_IRAK 81 358 - -
Viun2g01035 410 Pfam Protein tyrosine and serine/threonine kinase 79 354 IPR001245 GO:0004672|GO:0006468
Viun2g01035 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Viun2g01035 410 MobiDBLite consensus disorder prediction 9 53 - -
Viun2g01035 410 MobiDBLite consensus disorder prediction 382 410 - -
Viun2g01035 410 ProSiteProfiles Protein kinase domain profile. 75 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01035 410 Gene3D Phosphorylase Kinase; domain 1 51 160 - -
Viun2g01035 410 MobiDBLite consensus disorder prediction 360 410 - -
Viun2g01035 410 SUPERFAMILY Protein kinase-like (PK-like) 47 355 IPR011009 -
Viun2g01035 410 Gene3D Transferase(Phosphotransferase) domain 1 161 382 - -
Viun2g01035 410 ProSitePatterns Protein kinases ATP-binding region signature. 81 114 IPR017441 GO:0005524
Viun2g01035 410 PANTHER OS01G0588500 PROTEIN-RELATED 29 359 - -
Viun2g01035 410 FunFam Serine/threonine-protein kinase BIK1 43 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01035 Viun-Chr2 21159410 21162366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01035 51 355 Glycoside Hydrolase AT3G07070 53.247 5.78e-112 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Viun2g01035 PK_Tyr_Ser-Thr 4.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01035 - - gmx:100809778 779.63