Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01030 ATGCAGGAAGATATGAAGAAGCAGCAGAAGCAGAAACAGCTGGTCAATGAAGAATCTAAGAAGAAGGAGCGTCACATTGTGACGTGGACTCAAGAGGAGGATGATATACTCAGGGAGCAGATTGGCATCCATGGAACTGAAAATTGGGCAATCATTGCTTCTAAATTCAAGGATAAAACTACAAGACAGTGCAGAAGAAGATGGTACACTTATTTGAATTCTGACTTCAAGAAAGGAGGATGGTCACCAGAGGAAGACATACTTTTATGTGAGGCTCAAAAAATATTTGGTAACAGGTGGACAGAAATAGCAAAGGTGGTTTCAGGCAGAACGGATAATGCTGTGAAAAACCGTTTCTCCACACTGTGCAAAAAGAGAGCAAAATATGAAGCCTTGGCAAAAGAGAACAGCACTTCATACATCAATTCAAATAACAAAAGGACTTTTCTCCAGCACAGGTGTGATACAGATGTAGCATCAGAATCTGCAGTAGCTATTAAGAAGATGAGGAGGTCACATATCCCTGATGCTCAAGAAAAGATCAACTTTGGAGACAGATCACATAAACAAAATGGGATTCCAGTAAATCAGCAGTCAAGAGCACCATTTGCAGTTTTAGCTCAAAACTCTCGCAATGTCAACTTGCCAGACCAGGATCATGTCTGCAATTTGAAGTTTAGTGATTATGCCCAAAACAAGATTCAAGGAACATTCCTTAAAAAGGATGACCCAAAGATAAATGCGTTGATGCAACAAGCAGAGTTATTAAGCTCACTAGCTCTAAAAGTTGATGCAGAAAACGTGGATCAAAGTCTTGAAAATGCATGGAAGGTTCTTCAAGAGTTTCTTAACAGAACCAAAGAATCAGACATCCCGAGATACAAGATTCCAGATTTACAACTTGTAGATCTTAAAGATTTGTTGGAGGACTTGAAAAACAGCAGTGAGGAAATCCAGCCATGCTGGAGGCAAATGGAACTATATGAAGACTCTCCAGGCAGTTCTGAATACAGTACAGGATCAACTCTGCTGCCTCATTCAGCTGGTGAGAATTTGGAACACTCGTTGCATCAGGATATTGGAACCGAACTAAATATACAAATGGGAGATCCAGAAGAACTTAGGGGATGTCACCAAGGGGTTCTTTCTAGTGCAACATTAGATCAAGCAGATTTATTCCCGTCTTGTGAGGAACAGATAAACAATGATGGCATTGTTTCTGCCTTGTCATGTTCGGAGGAGTTCAGTTCACCTCTTCAAGTTACACCACTGTTTAGATCCTTAGCTGCTGGAATTCCTAGCCCGCAATTTTCAGAAAGTGAAAGGAACTTCCTTATGAAAACGCTTGGAATGGAATCTCCATCGCTCAACCCAGGTGTTAAACCGTCACAACCACCTCTCTGCAAAAGAGTGCTCCTAATCTGA 1425 0.4105 MQEDMKKQQKQKQLVNEESKKKERHIVTWTQEEDDILREQIGIHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDILLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENSTSYINSNNKRTFLQHRCDTDVASESAVAIKKMRRSHIPDAQEKINFGDRSHKQNGIPVNQQSRAPFAVLAQNSRNVNLPDQDHVCNLKFSDYAQNKIQGTFLKKDDPKINALMQQAELLSSLALKVDAENVDQSLENAWKVLQEFLNRTKESDIPRYKIPDLQLVDLKDLLEDLKNSSEEIQPCWRQMELYEDSPGSSEYSTGSTLLPHSAGENLEHSLHQDIGTELNIQMGDPEELRGCHQGVLSSATLDQADLFPSCEEQINNDGIVSALSCSEEFSSPLQVTPLFRSLAAGIPSPQFSESERNFLMKTLGMESPSLNPGVKPSQPPLCKRVLLI 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01030 474 Gene3D - 15 77 - -
Viun2g01030 474 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Viun2g01030 474 Pfam Myb-like DNA-binding domain 29 89 - -
Viun2g01030 474 SUPERFAMILY Homeodomain-like 25 119 IPR009057 -
Viun2g01030 474 Coils Coil 5 25 - -
Viun2g01030 474 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 127 IPR017930 -
Viun2g01030 474 CDD SANT 81 122 IPR001005 -
Viun2g01030 474 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 72 IPR017930 -
Viun2g01030 474 CDD SANT 28 72 IPR001005 -
Viun2g01030 474 Gene3D - 79 153 - -
Viun2g01030 474 SMART sant 25 74 IPR001005 -
Viun2g01030 474 SMART sant 77 125 IPR001005 -
Viun2g01030 474 FunFam Transcription factor MYB124 21 77 - -
Viun2g01030 474 ProSiteProfiles Myb-like domain profile. 29 72 IPR001005 -
Viun2g01030 474 PANTHER MYB PROTEIN-RELATED 28 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01030 Viun-Chr2 21109300 21115348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01030 14 323 MYB Transcription Factor Family AT2G02820 63.810 4.05e-138 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun2g01030 Myb_DNA-bind_6 3.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01030 K09422 - gmx:100807667 842.802