Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01027 ATGGCTTTCTTCCCAGCAAATTTCATGCTCCAAACCCCTCACCATGATGATCATCATCAACCCCCACCTTCTCTCACCTCAATTCTACCACCTCAGGAATATCATGGGGGAGTGACCTTTCTGGGAAAGAGATCCATGTCATTTTCATCGGGGATTGAGCACGGAGAAGAGCCCAATGCTGAGGAGGATTTGTCCGATGATGGATCACAGGCAGGGGAGAAGAAGAGGAGGCTCAACATGGAACAGGTGAAGACACTTGAGAAGAGCTTTGAGTTGGGGAATAAGCTTGAGCCAGAGAGGAAAATGCAACTTGCAAGAGCTCTTGGGTTGCAGCCAAGACAGATTGCGATATGGTTTCAGAACAGAAGGGCAAGGTGGAAGACCAAGCAGTTGGAGAAAGACTACGATCTTCTCAAAAGACAGTATGAATCTGTCAAGTCAGATAATGATGCACTTCAAACTCAGAACCAAAAACTTCAGGCTGAGATATTGGCACTGAAAAGTAGAGAGCCAACTGAATCCATCAACCTTAACAAAGAAACAGAAGGATCGTGCAGCAACAGAAGTGAGAACAGCTCGGACATCAAGTTGGATATCTCAAGGACACCAGCTATTGACAGTCCTGTATCTACACATCAGGCGAGCAGAACCCTGTTTCCATCTTCTGCTAGGCCTGCAGGGGTTGCTCAGCTTTTCCAAACTTCTTCAAGACCAGACCTTCCATGCCAAAAGATTGACCAAATGGTCAAAGAAGAAAGCCTAAGCAACATGTTCTGTGCCATGGATGACCAATCCGGGTTTTGGCCATGGTTGGAGCAGCAGCATTTCAACTGA 834 0.4664 MAFFPANFMLQTPHHDDHHQPPPSLTSILPPQEYHGGVTFLGKRSMSFSSGIEHGEEPNAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYESVKSDNDALQTQNQKLQAEILALKSREPTESINLNKETEGSCSNRSENSSDIKLDISRTPAIDSPVSTHQASRTLFPSSARPAGVAQLFQTSSRPDLPCQKIDQMVKEESLSNMFCAMDDQSGFWPWLEQQHFN 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01027 277 MobiDBLite consensus disorder prediction 174 195 - -
Viun2g01027 277 MobiDBLite consensus disorder prediction 177 195 - -
Viun2g01027 277 Pfam Homeodomain 74 127 IPR001356 GO:0003677
Viun2g01027 277 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 53 249 IPR045224 GO:0003700
Viun2g01027 277 MobiDBLite consensus disorder prediction 12 32 - -
Viun2g01027 277 SUPERFAMILY Homeodomain-like 62 131 IPR009057 -
Viun2g01027 277 Pfam Homeobox associated leucine zipper 129 169 IPR003106 GO:0006355|GO:0043565
Viun2g01027 277 Coils Coil 121 169 - -
Viun2g01027 277 ProSitePatterns 'Homeobox' domain signature. 104 127 IPR017970 GO:0000981|GO:0006355
Viun2g01027 277 CDD homeodomain 74 130 IPR001356 GO:0003677
Viun2g01027 277 ProSiteProfiles 'Homeobox' domain profile. 69 129 IPR001356 GO:0003677
Viun2g01027 277 FunFam Homeobox-leucine zipper protein ATHB-13 66 133 - -
Viun2g01027 277 Gene3D - 66 135 - -
Viun2g01027 277 SMART HOX_1 72 133 IPR001356 GO:0003677
Viun2g01027 277 MobiDBLite consensus disorder prediction 49 78 - -
Viun2g01027 277 PRINTS Lambda-repressor HTH signature 109 125 IPR000047 GO:0003677
Viun2g01027 277 PRINTS Lambda-repressor HTH signature 100 109 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01027 Viun-Chr2 21055232 21057286 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01027 1 277 Homeobox Transcription Factor Family AT1G69780 63.729 6.40e-122 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Viun2g01027 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01027 K09338 - gmx:100814080 515.383