Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01026 ATGTGGCCTAAAACCTGCAATGAGATGGCTTTCTTCCCAGCAAATTTCATGCTCCAAACCCCTCACCATGATGATCATCATCAACCCCCACCTTCTCTCACCTCAATTCTACCACCTCAGGAATATCATGGGGGAGTGACCTTTCTGGGAAAGAGATCCATGTCATTTTCATCGGGGATTGAGCACGGAGAAGAGCCCAATGCTGAGGAGGATTTGTCCGATGATGGATCACAGGCAGGGGAGAAGAAGAGGAGGCTCAACATGGAACAGGTGAAGACACTTGAGAAGAGCTTTGAGTTGGGGAATAAGCTTGAGCCAGAGAGGAAAATGCAACTTGCAAGAGCTCTTGGGTTGCAGCCAAGACAGATTGCGATATGGTTTCAGAACAGAAGGGCAAGGTGGAAGACCAAGCAGTTGGAGAAAGACTACGATCTTCTCAAAAGACAGTATGAATCTGTCAAGTCAGATAATGATGCACTTCAAACTCAGAACCAAAAACTTCAGGCTGAGATATTGGCACTGAAAAGTAGAGAGCCAACTGAATCCATCAACCTTAACAAAGAAACAGAAGGATCGTGCAGCAACAGAAGTGAGAACAGCTCGGACATCAAGTTGGATATCTCAAGGACACCAGCTATTGACAGTCCTGTATCTACACATCAGGCGAGCAGAACCCTGTTTCCATCTTCTGCTAGGCCTGCAGGGGTTGCTCAGCTTTTCCAAACTTCTTCAAGACCAGACCTTCCATGCCAAAAGATTGACCAAATGGTCAAAGAAGAAAGCCTAAGCAACATGTTCTGTGCCATGGATGACCAATCCGGGTTTTGGCCATGGTTGGAGCAGCAGCATTTCAACTGA 858 0.4662 MWPKTCNEMAFFPANFMLQTPHHDDHHQPPPSLTSILPPQEYHGGVTFLGKRSMSFSSGIEHGEEPNAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYESVKSDNDALQTQNQKLQAEILALKSREPTESINLNKETEGSCSNRSENSSDIKLDISRTPAIDSPVSTHQASRTLFPSSARPAGVAQLFQTSSRPDLPCQKIDQMVKEESLSNMFCAMDDQSGFWPWLEQQHFN 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01026 285 FunFam Homeobox-leucine zipper protein ATHB-13 74 141 - -
Viun2g01026 285 ProSiteProfiles 'Homeobox' domain profile. 77 137 IPR001356 GO:0003677
Viun2g01026 285 SMART HOX_1 80 141 IPR001356 GO:0003677
Viun2g01026 285 MobiDBLite consensus disorder prediction 182 203 - -
Viun2g01026 285 MobiDBLite consensus disorder prediction 185 203 - -
Viun2g01026 285 MobiDBLite consensus disorder prediction 20 40 - -
Viun2g01026 285 Gene3D - 74 143 - -
Viun2g01026 285 PRINTS Lambda-repressor HTH signature 108 117 IPR000047 GO:0003677
Viun2g01026 285 PRINTS Lambda-repressor HTH signature 117 133 IPR000047 GO:0003677
Viun2g01026 285 Coils Coil 129 177 - -
Viun2g01026 285 Pfam Homeobox associated leucine zipper 137 177 IPR003106 GO:0006355|GO:0043565
Viun2g01026 285 ProSitePatterns 'Homeobox' domain signature. 112 135 IPR017970 GO:0000981|GO:0006355
Viun2g01026 285 Pfam Homeodomain 82 135 IPR001356 GO:0003677
Viun2g01026 285 CDD homeodomain 82 138 IPR001356 GO:0003677
Viun2g01026 285 MobiDBLite consensus disorder prediction 57 86 - -
Viun2g01026 285 SUPERFAMILY Homeodomain-like 70 139 IPR009057 -
Viun2g01026 285 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 61 256 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01026 Viun-Chr2 21055232 21057300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01026 5 285 Homeobox Transcription Factor Family AT1G69780 63.333 3.79e-122 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Viun2g01026 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01026 K09338 - gmx:100814080 515.383