Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01013 ATGGAATTGGAGGCTGATCATCAAAATGGGATCCGAAGCAGACCCAATTTCCCTCTGCAGCTGTTAGAGAAAAAGGACGTTGATGACGTCACAGAACAACCTTGTTCCACCACTACCAGGGACAGCGTCGTAACTGCAACTACAATTACTACTACTACTTCTGTAACTAATAACAACCTCCACTTGGCGGAGCAGTCCAAGAAGCCGCCGCCAAAGAGGACTTCCACCAAGGACCGCCACACCAAGGTCGATGGCCGAGGCCGCCGGATCCGCATGCCGGCGGCCTGTGCTGCCAGAGTCTTTCAGCTAACGCGTGAGCTGGGACACAAGTCTGACGGAGAGACCATAGAGTGGCTCCTCCAGCAGGCCGAGCCTGCGGTCATCGCTGCCACCGGCACCGGCACCATTCCCGCCAACTTCACCTCCCTCAACATCTCCCTCCGCAGCTCCGGCTCCACCATGTCGGCGCCCTCCCACTACTTCCGCGGAAACTACTTCAACCCTAGCACGTTTTCGACCTCCACAGCCGCTGCTGCGGCTGCGGCGGCGCAGCTAAGGAACCGCGCGGAGTGGGACCGGAGCATGAGCATGGTGATGGAGGATTCTCGGAGGAGCATGTTGGAGAACACCTCTTCCATCTCCGCAATTTTGAACTTCAACCCTATGGGTAACATCAATGTAATTCAGCAAGCGAAACAAGAGCTTCGAGAAGAATCCGGTGGCGGCCTTGACTCGGTGGCTTCGGATTCTGACGGTAGCTTAGGGAGAAAGAGAAGGCCGGAGCAAGAACTCTCACAAATGGGAAGCTATTTGATACAATCGAGCACAGGGTCGCTTCCGTCGAGCCACGCCTCCAATACGGCGGCGTTTTGGATGGTGGCGGGTCACGGTAACCAATCCATGAACGGTGGTGGCGGTGGCGGCAGCGGCAATGGTAACGACAATCCCATATGGGCAATTCCCTCTGTTGGGAACAGTGGGGTGTATAGAGGAGGTATGTCTCCCCCAGGTGGCATTCATTTCATGAATTTTGCTTCTCCGATGCCCCTTATGCCCGGTGGTCAACTGGGCTCTGGTATGGTTGGTGGCGGAGGTGGCGGTGGCGGTAACGGCGGTGCTCAACTTCTAAGTGAAAGTAACTTAGGCATGCTTGCAGCCCTCAATGCCTACAGACAGATTCCGGCGAACGGCGTCTCGAGGTCTCCAGGAAGCGGCGGACAAGCTCACGGCGGAGATGACGGACGGGACTCAACCAGTCAACATTCCTGA 1269 0.565 MELEADHQNGIRSRPNFPLQLLEKKDVDDVTEQPCSTTTRDSVVTATTITTTTSVTNNNLHLAEQSKKPPPKRTSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTMSAPSHYFRGNYFNPSTFSTSTAAAAAAAAQLRNRAEWDRSMSMVMEDSRRSMLENTSSISAILNFNPMGNINVIQQAKQELREESGGGLDSVASDSDGSLGRKRRPEQELSQMGSYLIQSSTGSLPSSHASNTAAFWMVAGHGNQSMNGGGGGGSGNGNDNPIWAIPSVGNSGVYRGGMSPPGGIHFMNFASPMPLMPGGQLGSGMVGGGGGGGGNGGAQLLSESNLGMLAALNAYRQIPANGVSRSPGSGGQAHGGDDGRDSTSQHS 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01013 422 ProSiteProfiles TCP domain profile. 76 130 IPR017887 -
Viun2g01013 422 MobiDBLite consensus disorder prediction 63 83 - -
Viun2g01013 422 MobiDBLite consensus disorder prediction 66 83 - -
Viun2g01013 422 Pfam TCP family transcription factor 74 199 IPR017887 -
Viun2g01013 422 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 41 384 IPR005333 GO:0003700
Viun2g01013 422 MobiDBLite consensus disorder prediction 233 265 - -
Viun2g01013 422 MobiDBLite consensus disorder prediction 395 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01013 Viun-Chr2 20842420 20844920 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01013 15 355 TCP Transcription Factor Family AT3G47620 37.722 1.03e-53 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Viun2g01013 TCP 2.7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01013 - - vum:124821453 686.797