Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01003 ATGATGGAAGAGTTAAACAATGATGGTGAGAAACTTGATGAAGTTATGCTTCCTGGATTCAGGTTTCATCCCACTGATGAGGAGCTTGTAGGGTTTTACCTCAAGAGGAAGATCCAGCAACGCCCTTTCACTATTGAACTCATCAAACAGCTTGATATCTATAAATATGACCCTTGGGATCTTCCAAAGTTGGCCACCACAGGAGAGAAAGAGTGGTATTTTTATTGTCCCAGGGACAGAAAATACAGAAACAGTGCAAGGCCAAATAGGGTTACTGGAGCTGGGTTCTGGAAAGCTACAGGAACTGATAGACCAATCTACTCCTCTGAAGGTTCCAAGTGCATTGGCCTCAAGAAATCTCTGGTTTTTTACAAGGGTAGAGCTGCCAAAGGAGTTAAAACTGATTGGATGATGCATGAGTTCAGATTACCTTCTCTCACAGACTCACTATCCCCAAAGTACATAGACAAGAACATTCCTGCTAATGAATCATGGGCTATTTGCAGGATCTTCAAGAAAACCAATGCTACAGCTCAAAGAGCTTTATCTCAGTCATGGGTCTCTTCCCTCCCTGAAACAAGAACCTCTGATCATATCCTAACCAAAGATCAACACACCACGCAGTTTTGTTCAGACATATCATTTACAAAGAAAACTACCTTAGCCAGTCACTACTGTACTAATAACAATTACACTGACTCACAACCTTTGACCCCTTGTCCCTTAGATGTTGCCTCATACAAATCCATCATCAACCCATTGCTCTACAAAGCCTTTGATCATTTTCCCATTTCAAATGGAGACCTCAGCACGAGCTTTCTGTTTGAAACATCATCAGATGGTAATACTAATGCTAAATCTACCATGGATGTTTCTTCTATGTTGTTGAACATGTCATCCTCGGTGCTCGGAGATTTCAACAAGACTTCAGAGGATAATACAAATGCAACTACAAGCTTTGGTGCGTTGCAAGAGCATGGGTACTACCCATTACCGTTTCTACGTGAGATGCAAAGCACATTTGGTGAGCAAGAATATGATAATATGAATGCATTAAAGGGTCCTAATGTGAATATGCCTGGTGTTGATGAACAAGAGTTGGAAACAGTACGATCCATTGGGTTTCCATTCAATATTGGCGATGCATGGAAGTCAAATCTGCTTTGGGATACTTCGTCTTTTCCTTGTGATGTGTCATCTACTTTTTCCACAACTAAGTGCTATACTTAG 1230 0.4106 MMEELNNDGEKLDEVMLPGFRFHPTDEELVGFYLKRKIQQRPFTIELIKQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLTDSLSPKYIDKNIPANESWAICRIFKKTNATAQRALSQSWVSSLPETRTSDHILTKDQHTTQFCSDISFTKKTTLASHYCTNNNYTDSQPLTPCPLDVASYKSIINPLLYKAFDHFPISNGDLSTSFLFETSSDGNTNAKSTMDVSSMLLNMSSSVLGDFNKTSEDNTNATTSFGALQEHGYYPLPFLREMQSTFGEQEYDNMNALKGPNVNMPGVDEQELETVRSIGFPFNIGDAWKSNLLWDTSSFPCDVSSTFSTTKCYT 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01003 409 Gene3D NAC domain 25 178 IPR036093 GO:0003677|GO:0006355
Viun2g01003 409 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 271 - -
Viun2g01003 409 Pfam No apical meristem (NAM) protein 18 143 IPR003441 GO:0003677|GO:0006355
Viun2g01003 409 SUPERFAMILY NAC domain 15 173 IPR036093 GO:0003677|GO:0006355
Viun2g01003 409 ProSiteProfiles NAC domain profile. 16 173 IPR003441 GO:0003677|GO:0006355
Viun2g01003 409 FunFam NAC domain-containing protein 35 25 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01003 Viun-Chr2 20683641 20685538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01003 2 306 NAC Transcription Factor Family AT1G26870 55.901 1.46e-109 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun2g01003 NAM 1.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01003 - - gmx:100783995 653.284