Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00995 ATGGACCTCACCAACAACGCCAACGACACAGATTCTCAAACTCAAACCCCCCAACACCCCACCGCCACCACCACCACCAACGGATCCCTCAAGCGCCACCGCCCCACCACCGTTCCTCCGCCCTCACAACCACCGTCCGCGGTGGTTTTCTACAGGGAGTGCCTCAAAAACCACGCTGCCGGCATAGGTGGCCACGCGCTTGATGGATGCGGTGAGTTCATGCCCTCCTCTTCCTCCAATCCCACAGAACCGCGCTCGCTAACGTGCGCCGCCTGTGGATGCCACCGTAACTTCCACCGCCGTGACACACAGCACTATCAAAATAATCACTCCAACCCCAGGCCCAATTTCATAAGCTTCTACCACTCACCGCCGCCATCCCATCATGGCACGGGCCTGTGTACTAGCTCAAGCCCAGGACCGAGTCCAAGCCCAAGTCCGCTGTCAAGCCCAAGCCCGCCGCCTCTCTCCCACCGTTTCCCAGGTCCGAGACCGGTCCAGGGGCTCTTCGGCCAGGGAAGCGAGCATCACCACAGGAGTTTCAATCTCTCCGAGAGCCCCAGTGGAAAGAAGAGGTTCAGGACCAAGTTCAGCCAAGAGCAGAAGGAAAAGATGCAGAATTTCTCTGAGAGTTTGGGGTGGAGAATGCAGAAAGGGGATGAAGGGTTGGTGCAAGATTTCTGCAATGAGATTGGCGTTTCAAGAGGGGTCTTCAAGGTGTGGATGCACAACAATAAGAACAACAGCAGCAGGAAGAGATCGTTGGAGCCTGATGAAAAGATCAATGGCAATGCTTCTGATACACATAATAACAATCCTTACAACGATGACACTCATTGA 840 0.5524 MDLTNNANDTDSQTQTPQHPTATTTTNGSLKRHRPTTVPPPSQPPSAVVFYRECLKNHAAGIGGHALDGCGEFMPSSSSNPTEPRSLTCAACGCHRNFHRRDTQHYQNNHSNPRPNFISFYHSPPPSHHGTGLCTSSSPGPSPSPSPLSSPSPPPLSHRFPGPRPVQGLFGQGSEHHHRSFNLSESPSGKKRFRTKFSQEQKEKMQNFSESLGWRMQKGDEGLVQDFCNEIGVSRGVFKVWMHNNKNNSSRKRSLEPDEKINGNASDTHNNNPYNDDTH 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00995 279 MobiDBLite consensus disorder prediction 178 192 - -
Viun2g00995 279 MobiDBLite consensus disorder prediction 244 279 - -
Viun2g00995 279 FunFam Zinc-finger homeodomain protein 2 177 251 - -
Viun2g00995 279 MobiDBLite consensus disorder prediction 249 263 - -
Viun2g00995 279 SUPERFAMILY Homeodomain-like 178 249 IPR009057 -
Viun2g00995 279 NCBIfam homeobox domain, ZF-HD class 190 247 IPR006455 -
Viun2g00995 279 MobiDBLite consensus disorder prediction 104 192 - -
Viun2g00995 279 Pfam ZF-HD protein dimerisation region 49 103 IPR006456 -
Viun2g00995 279 MobiDBLite consensus disorder prediction 1 33 - -
Viun2g00995 279 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 51 102 IPR006456 -
Viun2g00995 279 MobiDBLite consensus disorder prediction 140 161 - -
Viun2g00995 279 MobiDBLite consensus disorder prediction 1 45 - -
Viun2g00995 279 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 51 102 IPR006456 -
Viun2g00995 279 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 19 248 - -
Viun2g00995 279 Gene3D - 176 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00995 Viun-Chr2 20632358 20635370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00995 47 246 ZF-HD Transcription Factor Family AT5G15210 49.000 8.54e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Viun2g00995 ZF-HD_dimer 2.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00995 - - gmx:100817446 347.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g00995 2 20632358 20635370 Viun2g00995 2 20632358 20635370 ECH