Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Viun2g00993 | ATGAGCGATCACTTGGTGCTGTTCGTTGACCGTCTCGCGCGCCCTGTCCCCGTTGACCCGGTGGCGCAGCCGGCTCAGCTTCCCTCCGAGCCCTCTCCGCCTCCGGCTGCCGCGGATGCCACCATAGCCGTCGCTGAGAGTTCCGGCACCGCTCCGGCAGAGGATCGCGTCGGGGAGGGGGGTGATGAGGAGGAGCCGCTGATCCAGATGGCGGAGTGCCGCATCTGCCAGGAGGAGGACGGCGTTTCCAATTTGGAAACGCCCTGCGCCTGTAGCGGCAGTCTTAAGTATGCTCACAGAAAGTGTGTCCAGCATTGGTGTGATGAGAAAGGAGACATTACTTGTGAGATATGTCATCAGCCTTATCAACCTGGGTATACTGCACCACCACCTCGTCCAAACCCTGAAGAAACTACCATTGATATAGGAGGTGGCTGGACAATATCTGGCACACCTTTAGACTTGCGTGATCCTCGGCTCTTGGCAATTGCAGAGGCAGAACGTCAATTCTTGGATGCTGAATATGATGAGTATGCTGCTTCCAATGCCAGTGGGGCTGCATTTTGCCGCTCAGCTGCTTTAATTTTAATGGCTCTTCTACTTTTGCGGCATGCACTCTCTGTCTCGGATGGTGATTCTTCTGACGATGATCCATCCAATTTTTTCTCTCTTTTCTTGCTTCGAGCTGCTGGATTTTTATTACCTTGCTACATCATGGCCTGGGCAATCAGTATTCTGCAGCGTCGACGACAAAGACAACAGGAGGCTGCAGCACTAGCGGCAACCCAAGTTGCTTTTGTTCTTCAATCTGGGCAGCGTAGAGGTCTACAGTTCGCAATAGCACCAGGACCAGCCACAGTGCACCAGGAACAAGTGTAA | 879 | 0.537 | MSDHLVLFVDRLARPVPVDPVAQPAQLPSEPSPPPAAADATIAVAESSGTAPAEDRVGEGGDEEEPLIQMAECRICQEEDGVSNLETPCACSGSLKYAHRKCVQHWCDEKGDITCEICHQPYQPGYTAPPPRPNPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLDAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVSDGDSSDDDPSNFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQQEAAALAATQVAFVLQSGQRRGLQFAIAPGPATVHQEQV | 292 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Viun2g00993 | 292 | SMART | ringv_2 | 72 | 119 | IPR011016 | GO:0008270 | |
Viun2g00993 | 292 | MobiDBLite | consensus disorder prediction | 18 | 42 | - | - | |
Viun2g00993 | 292 | MobiDBLite | consensus disorder prediction | 21 | 35 | - | - | |
Viun2g00993 | 292 | Pfam | RING-variant domain | 73 | 118 | IPR011016 | GO:0008270 | |
Viun2g00993 | 292 | Pfam | Protein of unknown function (DUF3675) | 124 | 243 | IPR022143 | - | |
Viun2g00993 | 292 | PANTHER | RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING | 1 | 254 | IPR033275 | - | |
Viun2g00993 | 292 | FunFam | RING/FYVE/PHD zinc finger protein | 61 | 129 | - | - | |
Viun2g00993 | 292 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 65 | 125 | IPR011016 | GO:0008270 | |
Viun2g00993 | 292 | Coils | Coil | 161 | 181 | - | - | |
Viun2g00993 | 292 | CDD | RING_CH-C4HC3_MARCH | 73 | 119 | - | - | |
Viun2g00993 | 292 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 61 | 128 | IPR013083 | - | |
Viun2g00993 | 292 | SUPERFAMILY | RING/U-box | 71 | 123 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Viun2g00993 | Viun-Chr2 | 20603576 | 20607553 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Viun2g00993 | 72 | 148 | C3H Transcription Factor Family | AT2G37950 | 37.079 | 3.21e-08 | 51.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Viun2g00993 | - | - | gmx:100779674 | 443.736 |