Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00992 ATGTTGAATGTTGACGTGAATGGGAACAACAAAAGGAAGAGGTGTGGGAGGGTTTTCAGGTTCAAGAACTTTGCTGAACCTGGTTATCCTGTTATGTTTGGTGGGCCATTTCGTGAGAATGTGAATTCATTGCTTGAATATGCAAATTTGGAGACTCATTTAAGCATGCCAATGTGGTCTTTTCAACTTGAAGTTCATCATCACCCTCCTTTGCATATCTTGCTGTTTGTGATTGAAGAGCCAACACAAGCACTGCTCAATCGTCATTGCAAGCATTGTCAATACGTTGGCTGGGGAAACCATTTGATCTGCAACAAGAAGTATCACTTTGTGTTACCCTCAAAGGAGGCACTTGGTAGCTGCAGGAACTGTGAAGGGTGCTGTGAGGGAAGTGCTACAGTTAACAATGGTAAGTCAAAGTTAATTGAATTACAGGGTCATATGATGCATGGTGTTTTTCACTCTAATGGATTCGGCCATTTGCTATGTGTCAATGGATTGGAAATGGGTTCTAATTTGGCTGGAAACCAGATCATGGACTTTTGGAACCGTTTGTGCAAGGGATTGCAAGCAAGGAAGGTGAGTTTGAATGACATTTCACAGAAGAAAGGAATGGAACTGAGACTTGTGAATGGAATAGCATACAGTGAATCATGGTTCAGTCGATGGGGTTACAAATTCGGCAGAGGAAGCTATGGTGTAACTCAATCCATGTACCAGAAAGCCATAGAAGCAATAAGAAGCATGCCACTGTACTTGATCACACACCACATCACCAATTCCAACCACGCCATTCCACTCATCTTCTCAAAATATCAAACACTTTCAGATCAGACCCTAGTTACCCTCGGTGACCTCTTCTCTTACATGTTAGACCTCAAATCACGTCTTCCTCCAGAAACCTGCATTGCCTCTTACAGCACAACTGCATTGGTCGAGACCAATTGTCGTTGGTCACCGAAAAGGATTGAGATGGCAACAAGGGTCATTGTTGAGGCCTTGAAAAAAACTGAGTTCAGATGGGTTTCACGGCAAGAGGTTAGAGATGCTGCTCGTGCATACATTGGAGACACGGGTCTGTTAGATTTTGTGTTGAAGTCCTTGGGAAACCATGTTGTCGGAAACTACCTCGTTCGTAGAAGCTTGAACCCTGTGACCAAAGTGTTGGAGTATTGCTTGGAAGACATTTCTAAGGTTTACCCTTGTAATGAAAGTGTGGTAATGAGTAACAAAGTGAAGGACAAGTACAAGATCACAAGAACTCAAGTGATGAAAGACATGCTTTTTCTGTACAAGTATATTCTCATAGACCCTAAACCTATCATGGGGTCAGAATTTCTCTCAGCTATACCATTAGCAGCAAGGATAATTCTTGACACCAAGTATTTTATAAGAGATTACTGGGAAGATTTTTCTCTCCAAGTTGAAGTAGGTTCAGAAGAAAAACTCAACCTTTACTGCACAATTTTGGTGAGGAATGATGGTGATGGTGATGTGTACCTAAACAAGGCCTTTATGCCACCCTATGAATGTGTCATACTGAAAAGAAATTCTACTGTGAATGAGTTGAAGGTGGAGGTTGAAAGAAGGTTTAGAGAGATTTATTGGGGGTTGAAGAGTTTTGTGGTGGAATCAGTTCAGAATTTGAGTGTGAACGATGGAACTGAAATGGTTTTTGGAGTGACCAAAGTGGGTGAAAAGATTGTGGTTGAAGGTCGTGACAGCAACATGAGAGAAAATATGATTGAGCAAATGTGTGAACGTGATCCAAATAGTGGTGCAGTGGATTGTAGTTGTGGAACCATTGAAGATGATGGTGAAAGAATGGTGTCGTGTGATATTTGTGAAATTTTGCAACACACTCGATGTGTTAGAATTCCAAACGACGAAGAGATTCCTCATATTTTTCTCTGCAAAAAATGTGAACAAGAAATTGTATTGCTTCCTTCTTTGCCATGA 1959 0.4125 MLNVDVNGNNKRKRCGRVFRFKNFAEPGYPVMFGGPFRENVNSLLEYANLETHLSMPMWSFQLEVHHHPPLHILLFVIEEPTQALLNRHCKHCQYVGWGNHLICNKKYHFVLPSKEALGSCRNCEGCCEGSATVNNGKSKLIELQGHMMHGVFHSNGFGHLLCVNGLEMGSNLAGNQIMDFWNRLCKGLQARKVSLNDISQKKGMELRLVNGIAYSESWFSRWGYKFGRGSYGVTQSMYQKAIEAIRSMPLYLITHHITNSNHAIPLIFSKYQTLSDQTLVTLGDLFSYMLDLKSRLPPETCIASYSTTALVETNCRWSPKRIEMATRVIVEALKKTEFRWVSRQEVRDAARAYIGDTGLLDFVLKSLGNHVVGNYLVRRSLNPVTKVLEYCLEDISKVYPCNESVVMSNKVKDKYKITRTQVMKDMLFLYKYILIDPKPIMGSEFLSAIPLAARIILDTKYFIRDYWEDFSLQVEVGSEEKLNLYCTILVRNDGDGDVYLNKAFMPPYECVILKRNSTVNELKVEVERRFREIYWGLKSFVVESVQNLSVNDGTEMVFGVTKVGEKIVVEGRDSNMRENMIEQMCERDPNSGAVDCSCGTIEDDGERMVSCDICEILQHTRCVRIPNDEEIPHIFLCKKCEQEIVLLPSLP 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00992 652 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 581 645 IPR013083 -
Viun2g00992 652 SUPERFAMILY FYVE/PHD zinc finger 589 644 IPR011011 -
Viun2g00992 652 CDD PHD_MMD1_like 596 641 - -
Viun2g00992 652 Pfam PHD-finger 597 643 IPR019787 -
Viun2g00992 652 ProSitePatterns Zinc finger PHD-type signature. 597 641 IPR019786 -
Viun2g00992 652 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 646 - -
Viun2g00992 652 SMART PHD_3 596 642 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00992 Viun-Chr2 20591293 20595191 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00992 11 652 PHD Transcription Factor Family AT5G22260 51.051 0.0 657
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Viun2g00992 PHD 3.2e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00992 K26271 - gmx:100780210 1136.32