Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00979 ATGGCTTCAGGGACCACCGAGGTGCCGGAGAATTCTGTTTTCGAGAGGGTCGAGCGAAACAGAGACATAACTCTGTTTCTTCCCTTTCTCTTTGGCCTCTCGGAGACCACCGCAGGACGGGACGGCGATGACCCACGTCACGAAAACGGGAACACTGAAGCCCGCCAGCCTCAAAGAATCATCTTGGTGAACCCCTTCACTCAGGGCATGGTGGTCATCGACGCGGACTCGCGCCTCGAAGCTCTGTTTCGCGAACTCGGCAGCGGAAAAGGTGGTCGACCTCCGGCTACGAAGGAATCCATTGAGGCCATGCCAAGTGTGGAAGTTGGAGAGGGTGAGGATTTGGAGTGCGTGGTTTGTTTGGAGGAGTTTGAGGTTGGTGGGGTGGCGAAGGAGATGCCGTGTAAGCACAAGTTTCATGGTGATTGTATTGAGAAGTGGTTGGGGATGCATGGGTCTTGCCCTGTGTGTAGGTACGAGATGCCCGTGGAGAATAATTTCGGGAGGAAAAGCGAGGAAGAAGAAGGGGGAGAGAGGAGAAGGGATGGTGGTGATGAAGTTTGGGTTAGTTTTTCTTACAATAGGATTCGGAGAGGCCAGGATCATGATCAAGCTGCTTCTTCAAATGATGATTCTCCATCAAGTCATGGAGATGATGATGATGATGATGTTGTAGAGAGTTAG 684 0.5205 MASGTTEVPENSVFERVERNRDITLFLPFLFGLSETTAGRDGDDPRHENGNTEARQPQRIILVNPFTQGMVVIDADSRLEALFRELGSGKGGRPPATKESIEAMPSVEVGEGEDLECVVCLEEFEVGGVAKEMPCKHKFHGDCIEKWLGMHGSCPVCRYEMPVENNFGRKSEEEEGGERRRDGGDEVWVSFSYNRIRRGQDHDQAASSNDDSPSSHGDDDDDDVVES 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00979 227 SMART ring_2 117 157 IPR001841 -
Viun2g00979 227 MobiDBLite consensus disorder prediction 39 53 - -
Viun2g00979 227 FunFam E3 ubiquitin-protein ligase RNF181 85 164 - -
Viun2g00979 227 ProSiteProfiles Zinc finger RING-type profile. 117 158 IPR001841 -
Viun2g00979 227 MobiDBLite consensus disorder prediction 37 57 - -
Viun2g00979 227 Pfam Ring finger domain 116 158 IPR001841 -
Viun2g00979 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 164 IPR013083 -
Viun2g00979 227 SUPERFAMILY RING/U-box 101 163 - -
Viun2g00979 227 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 44 162 - -
Viun2g00979 227 MobiDBLite consensus disorder prediction 198 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00979 Viun-Chr2 20499996 20501075 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00979 11 215 C3H Transcription Factor Family AT1G26800 50.971 1.44e-60 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00979 - - gmx:100819587 266.159