Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00977 ATGGATCTACAAAACATGCAAAATCAAAGCATGCATTTTGTGTTGTCCACTGATGCCAAACCAAGGCTAAAGTGGACTCCTGAACTTCACCAACGGTTCATTGAGGCCACAAATCAGCTTGGAGGTGCAGATAAAGCAACTCCAAAGAGTCTTATGAGGGTGATGGGGATTCCAGGACTTACTTTGTACCACCTGAAGAGCCATTTACAGAAATATAGACTTGGGAAAAGCCAACAACTAGATACCAGCTCTGACAGCAAACAAGAAGATTACATAGAAACCAAGAGCAGTGATGGCCATTGCAGCAGGGAAATCAGTCTTGGGCCCCAGAATCAAATTACTGAAAACATGCAGATAGCTCAGGCCCTCCAAATGCAAATGGAAGTACAAAGGAAACTTTATGAACAAATTGAGGTGCAGAAACATTTGCAGCTCAGAATTGAAGCTCAAGGGAAGTATTTGCAATCAGTGCTAAAGAAAGCACAGGAAGCACTTGCTGGATACAATTCTGCCCCAGTGGGGATAGAGCTCACAAAAGCTGAACTTTCCCAGCTTGTCACCATCATCAACAATGCTTGTCCAAGTTCTCCTATCTCAGAACTAACAGAGACAAGAGGGTTGAGTTTAAGCTGTGGGGACAGGAAAAGAGACAGAGGCACTATGTGTTCACTGGAAAGTTCCTTAACCTCTTCTGAAAGCTCTGGGAGAAAGGAAGAGAAACAGTCAATGGAAGAGATAGAGGAGTTCAAAAGCTCCAATAATGCTTCACTTGAATTGCCGTTGATGGGCTTTCACACTGAGAATAAAGCATCCAACACTGGATCTAGCAGTGAGGCTAGTGGGAGAAAGAGAAGTGCAGCAACAAAATCTAATGATGGTAGGTATGTTGTTGAACAACCCTGTGAAAAAAGAAGTGGCAACAAGTTCAGAAAACCAGAAATGCTTGACTTGAACAGCCAATGCCAGATTGACATGGATTCAACAACTTCAAAAACATTAGACTTAAATTGCAGCTTAAACTTTTGGGAACCATGA 1035 0.4251 MDLQNMQNQSMHFVLSTDAKPRLKWTPELHQRFIEATNQLGGADKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQQLDTSSDSKQEDYIETKSSDGHCSREISLGPQNQITENMQIAQALQMQMEVQRKLYEQIEVQKHLQLRIEAQGKYLQSVLKKAQEALAGYNSAPVGIELTKAELSQLVTIINNACPSSPISELTETRGLSLSCGDRKRDRGTMCSLESSLTSSESSGRKEEKQSMEEIEEFKSSNNASLELPLMGFHTENKASNTGSSSEASGRKRSAATKSNDGRYVVEQPCEKRSGNKFRKPEMLDLNSQCQIDMDSTTSKTLDLNCSLNFWEP 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00977 344 MobiDBLite consensus disorder prediction 232 247 - -
Viun2g00977 344 SUPERFAMILY Homeodomain-like 19 75 IPR009057 -
Viun2g00977 344 FunFam Myb family transcription factor 19 77 - -
Viun2g00977 344 Pfam Myb-like DNA-binding domain 22 73 IPR001005 -
Viun2g00977 344 Coils Coil 120 140 - -
Viun2g00977 344 MobiDBLite consensus disorder prediction 266 310 - -
Viun2g00977 344 MobiDBLite consensus disorder prediction 86 100 - -
Viun2g00977 344 MobiDBLite consensus disorder prediction 76 105 - -
Viun2g00977 344 NCBIfam myb-like DNA-binding domain, SHAQKYF class 20 75 IPR006447 GO:0003677
Viun2g00977 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 77 IPR017930 -
Viun2g00977 344 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 5 268 IPR044848 GO:0003700
Viun2g00977 344 Pfam MYB-CC type transfactor, LHEQLE motif 117 163 IPR025756 -
Viun2g00977 344 MobiDBLite consensus disorder prediction 266 286 - -
Viun2g00977 344 MobiDBLite consensus disorder prediction 296 310 - -
Viun2g00977 344 MobiDBLite consensus disorder prediction 219 252 - -
Viun2g00977 344 Gene3D - 19 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00977 Viun-Chr2 20490604 20492420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00977 11 336 G2-like Transcription Factor Family AT1G69580 47.788 7.69e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Viun2g00977 Myb_DNA-binding 1.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00977 - - gmx:100787178 576.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g00977 2 20490604 20492420 Viun2g00977 2 20490604 20492420 ECH