Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00974 ATGGCCAGCAGCAAGTGTTGCATGATCTCTTCACAGCAAAACCAGAACGCCCCCACATGTTACCCTTTTCCATCTTCTCCTTCAATGGGAATGGTCTGTGCAGACATGATGGGGTCTCTCTCTCTTGCCACTGTTTCAAATGCTCTTTCGTCTCAACAAAGCTTTGGTTATGGCCATCATCATCATGGACATGCTTCTGGAGTGGAAAATGGAAGGAGCACAAGCTGGAGTTTTCCCTTCATGAGGGAGTTCCTCTCCTCAAACTTTGAAGACTGTAGTGATGTTGGGGCTGGGGAGAGTAACAGTAATGAGAAAACAAACAACAATGGGAAGTTCAGTGAAGAAAGTAACCCTAACGAGAACCTTCTCAGTGGGAAAGAGGTAGATAGTGGACACTCTAAGCTTTGTGCAAGAGGGCATTGGAGGCCTGCGGAAGATTCCAAGCTCAAGGAACTTGTGGCTCTTTATGGCCCTCAGAATTGGAACCTCATAGCTGAAAAGCTTGAAGGAAGATCAGGGAAAAGTTGTAGGCTGAGGTGGTTCAACCAGTTAGATCCAAGGATCAATAGAAGAGCTTTCAGTGAAGAGGAGGAAGAGAGGCTAATGCAGGCACATAGAATTTATGGCAACAAATGGGCCATGATTGCAAGGCTTTTCCCTGGGAGAACAGATAATGCAGTGAAGAATCACTGGCATGTTATAATGGCCAGGAAGTACAGGGAACAATCCAGTGCTTACAGGAGGAGGAGAATGACCCAATCTGTTTACAAAAGGGTGGAGCAAAATCCAACCTTTGTTTGCAACACCACGGAACAAGAACCATCATCTTCTTATTGTCTCAATCTCCTCCATAATGGAGTAGGACTCACAAATAACGTGCCTAGTTTCCCATCCTTCCATGGAGTAGGAGGTTCTGGTGAGGTTGTTGATTTTGGCTTAAATGCTTCTCCACAAAACATCACTGGTGCGAGAGAAACAATGTCAAACACCCTACAAGTTGGCTTCTGCGCTCAACCTCCACAAGCACCATTTGATTTCTTCTCCGGTGGTGGAAGCAATGACATGACGGGAGAGTGTAATAACGTGCAGATGAGAAGCTGGGAAAGGAGCAATGAATCTGTTGAGCATCATTGGCAGCAATCTGGTTCATACCCTCATTATCCCCAACAATATTTGATGGCAATGCAACAGGTAGAGAACAAGAGACGCAACAATTTTTACAGTTTGTTGAATTCGTCATCATCGGTAGCAGGAAGCAGAGGCAAGGAAGCATCATCATCATCATCAGCATGTGTTGCAGGAATGAGAGATAAAGTGGTGAAAAGTGACCCCCCAGATGGTGTTCCACCCCCATTTTTTGACTTCCTTGGAGTAGGAGCCACATGA 1386 0.4553 MASSKCCMISSQQNQNAPTCYPFPSSPSMGMVCADMMGSLSLATVSNALSSQQSFGYGHHHHGHASGVENGRSTSWSFPFMREFLSSNFEDCSDVGAGESNSNEKTNNNGKFSEESNPNENLLSGKEVDSGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRMTQSVYKRVEQNPTFVCNTTEQEPSSSYCLNLLHNGVGLTNNVPSFPSFHGVGGSGEVVDFGLNASPQNITGARETMSNTLQVGFCAQPPQAPFDFFSGGGSNDMTGECNNVQMRSWERSNESVEHHWQQSGSYPHYPQQYLMAMQQVENKRRNNFYSLLNSSSSVAGSRGKEASSSSSACVAGMRDKVVKSDPPDGVPPPFFDFLGVGAT 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00974 461 FunFam MYB transcription factor 138 189 - -
Viun2g00974 461 Gene3D - 192 262 - -
Viun2g00974 461 SMART sant 189 237 IPR001005 -
Viun2g00974 461 SMART sant 137 186 IPR001005 -
Viun2g00974 461 PANTHER MYB PROTEIN-RELATED 138 279 - -
Viun2g00974 461 Pfam Myb-like DNA-binding domain 138 184 IPR001005 -
Viun2g00974 461 Pfam Myb-like DNA-binding domain 190 233 IPR001005 -
Viun2g00974 461 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 138 184 IPR017930 -
Viun2g00974 461 FunFam MYB transcription factor 191 261 - -
Viun2g00974 461 ProSiteProfiles Myb-like domain profile. 185 235 IPR001005 -
Viun2g00974 461 Gene3D - 138 189 - -
Viun2g00974 461 MobiDBLite consensus disorder prediction 95 126 - -
Viun2g00974 461 CDD SANT 141 182 IPR001005 -
Viun2g00974 461 ProSiteProfiles Myb-like domain profile. 138 184 IPR001005 -
Viun2g00974 461 CDD SANT 192 232 IPR001005 -
Viun2g00974 461 SUPERFAMILY Homeodomain-like 138 231 IPR009057 -
Viun2g00974 461 MobiDBLite consensus disorder prediction 95 128 - -
Viun2g00974 461 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 185 239 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00974 Viun-Chr2 20416949 20419161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00974 131 310 MYB Transcription Factor Family AT1G69560 65.385 5.79e-78 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun2g00974 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00974 K09422 - gmx:100776292 631.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g00974 2 20416949 20419161 Viun2g00974 2 20416949 20419161 ECH