Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00972 ATGCCTTCCAAGCGCTATAAATTGAGTGCCACCTTCCTTCACTTTTCCTTCACTCACACTGCAATTCAACCTTCTCTGTCAAAGAAAATGGCTCAGTTTCTTCTGCTGCTCTTGGTGGGGCTTCTTCTCACAATGTTCTCCTCTGCCTATGGCTATGGCTACGGTGGAGGCTGGGTTAATGCACACGCCACCTTCTATGGAGGGAGTGATGCATCTGGAACAATGGGTGGGGCTTGTGGGTATGGGAACCTCTACAGCCAAGGCTATGGAACAAACACTGCTGCTTTAAGCACTGCTATGTTCAACAATGGTCTGAGTTGTGGTTCATGCTATGAGATAAGGTGTGTGAGTGATCACAGGTGGTGCCTTCCTGGTTCCATTTTGGTCACTGCCACCAATTTCTGTCCTCCAAACAATGCCTTACCCAACAATGCGGGAGGGTGGTGCAACCCTCCCCTGCACCATTTTGACCTCTCTCAACCCGTTTTTCTGCGCATTGCACAATACAAAGCTGGAATCGTGCCTGTGTCCTACAGAAGGGTGCCCTGCAGAAGAAGGGGTGGCATAAGGTTCACGATAAATGGTCACTCCTACTTCAACCTGGTCCTGGTAACAAACGTAGGAGGTGCCGGGGATGTGCATGGTGTGGCCATAAAAGGGTCCAGAACCGGGTGGATGCCAATGTCCAGAAATTGGGGTCAAAACTGGCAGAGCAACAACTATCTCAATGGCCAAAGCCTCTCCTTTAAGGTCACAACCAGTGATGGCCACACAGTGGTGTCCTACAATGTTGCCCCAGCTGGGTGGTCCTTCGGACAAACATACACTGGTGCTCAATTCCGCTAG 846 0.5047 MPSKRYKLSATFLHFSFTHTAIQPSLSKKMAQFLLLLLVGLLLTMFSSAYGYGYGGGWVNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTAMFNNGLSCGSCYEIRCVSDHRWCLPGSILVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPVFLRIAQYKAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHGVAIKGSRTGWMPMSRNWGQNWQSNNYLNGQSLSFKVTTSDGHTVVSYNVAPAGWSFGQTYTGAQFR 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00972 281 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 198 277 IPR007117 -
Viun2g00972 281 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 76 188 IPR007112 -
Viun2g00972 281 Pfam Lytic transglycolase 93 178 IPR009009 -
Viun2g00972 281 Gene3D - 47 184 IPR036908 -
Viun2g00972 281 Gene3D - 188 280 IPR036749 -
Viun2g00972 281 PRINTS Expansin signature 127 137 IPR002963 GO:0009664
Viun2g00972 281 PRINTS Expansin signature 163 176 IPR002963 GO:0009664
Viun2g00972 281 PRINTS Expansin signature 234 255 IPR002963 GO:0009664
Viun2g00972 281 PRINTS Expansin signature 88 102 IPR002963 GO:0009664
Viun2g00972 281 PRINTS Expansin signature 146 163 IPR002963 GO:0009664
Viun2g00972 281 PRINTS Expansin signature 187 199 IPR002963 GO:0009664
Viun2g00972 281 PRINTS Expansin signature 199 220 IPR002963 GO:0009664
Viun2g00972 281 PRINTS Expansin signature 263 279 IPR002963 GO:0009664
Viun2g00972 281 PRINTS Expansin signature 115 126 IPR002963 GO:0009664
Viun2g00972 281 SUPERFAMILY PHL pollen allergen 185 277 IPR036749 -
Viun2g00972 281 FunFam Expansin 188 280 - -
Viun2g00972 281 PRINTS Expansin/Lol pI family signature 75 93 IPR007118 GO:0005576
Viun2g00972 281 PRINTS Expansin/Lol pI family signature 97 115 IPR007118 GO:0005576
Viun2g00972 281 PRINTS Expansin/Lol pI family signature 263 277 IPR007118 GO:0005576
Viun2g00972 281 PRINTS Expansin/Lol pI family signature 57 72 IPR007118 GO:0005576
Viun2g00972 281 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576
Viun2g00972 281 PRINTS Expansin/Lol pI family signature 171 187 IPR007118 GO:0005576
Viun2g00972 281 SMART dpbb_1 93 178 IPR007112 -
Viun2g00972 281 FunFam Expansin 47 184 - -
Viun2g00972 281 CDD DPBB_EXPA_N 58 183 - -
Viun2g00972 281 SUPERFAMILY Barwin-like endoglucanases 57 206 IPR036908 -
Viun2g00972 281 Pfam Expansin C-terminal domain 189 266 IPR007117 -
Viun2g00972 281 PANTHER EXPANSIN-A15 35 280 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00972 Viun-Chr2 20378655 20380768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00972 38 281 Expansin Gene Family AT2G03090 83.333 4.20e-153 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00972 - - gmx:100796316 498.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g00972 2 20378655 20380768 Viun2g00972 2 20378655 20380768 ECH