Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00952 ATGGAGGGCAGAACAAGCTCTGTGCTTCCACCTGGTTTCAGGTTTCACCCCACTGATGAGGAACTAATCGTGTACTACCTTTGTAACCAAGCCACATCAAAACCATGCCCTGCATCGATCATTCCAGAAGTTGATATCTATAAGTTTGATCCGTGGGAATTACCTGAGAAAACAGACTTTGGAGAAAATGAATGGTACTTCTTTACCCCAAGAGAGAGGAAGTACCCAAATGGGGTGAGGCCTAATAGAGCAACTGTGTCTGGGTATTGGAAGGCCACTGGTACTGATAAAGCAATCTATAGTGGCTCTAAGCATATTGGGGTGAAGAAAGCTTTGGTCTTTTACAAGGGTAAGCCACCAAAGGGTATCAAGACAGATTGGATTATGCATGAGTACAGGTTAATAGGATCAAGAAGACAAACCAATAGACAAATTGGATCCATGAGGCTAGATGACTGGGTCTTGTGTAGGATCTACAAGAAGAAGAACATGGGAAAATCATTGGAGGCAAAAGAGGACTACCCAATAGCACAAATCAATCTCACACCACCAAATAATGAGACTGAACAAGAAGTGGTGAAATTTCCAAGGACTAGTTCCCTTACTCATCTTTTGGATATGGATTACTTGGGTCCAATATCACACATACTATCTGATTCATCATACACTTCAACCTTTGATTTTCAACTTAACACTGCCAATGCTGGAATAGACCCCTTCATAAAGCCACAGCCACTTGAAATTCCTAATAACCTTTATGCAGCAGATTCAGGGAAGTACCAAGTGAAACAGAACAGCACCATCAACCCCACCATCTTTGTGAACCATGTCTATGATCAGAGAGGACAATACCAAAAATGA 861 0.4181 MEGRTSSVLPPGFRFHPTDEELIVYYLCNQATSKPCPASIIPEVDIYKFDPWELPEKTDFGENEWYFFTPRERKYPNGVRPNRATVSGYWKATGTDKAIYSGSKHIGVKKALVFYKGKPPKGIKTDWIMHEYRLIGSRRQTNRQIGSMRLDDWVLCRIYKKKNMGKSLEAKEDYPIAQINLTPPNNETEQEVVKFPRTSSLTHLLDMDYLGPISHILSDSSYTSTFDFQLNTANAGIDPFIKPQPLEIPNNLYAADSGKYQVKQNSTINPTIFVNHVYDQRGQYQK 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00952 286 PANTHER NAC TRANSCRIPTION FACTOR 56 9 182 - -
Viun2g00952 286 FunFam NAC transcription factor 18 165 - -
Viun2g00952 286 ProSiteProfiles NAC domain profile. 9 161 IPR003441 GO:0003677|GO:0006355
Viun2g00952 286 Pfam No apical meristem (NAM) protein 10 134 IPR003441 GO:0003677|GO:0006355
Viun2g00952 286 Gene3D NAC domain 18 166 IPR036093 GO:0003677|GO:0006355
Viun2g00952 286 SUPERFAMILY NAC domain 5 161 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00952 Viun-Chr2 20264548 20266034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00952 1 222 NAC Transcription Factor Family AT1G69490 67.094 6.82e-116 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun2g00952 NAM 2.4e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00952 - - gmx:100170717 540.806