Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00949 ATGGAGGATAGCAGAAATTTTCCATTAACACTGGGAAGGATGCGATGCTGTGAGAATGTAGGGTTGAAGAAAGGACCATGGACTCCAGAAGAAGACAACAAGCTCCTCGACTACGTTCGGAACCATGGTCATGGAAAATGGCGTTCAGTGCCTGCCAAAGCGGGTCTTCAAAGATGTGGAAAGAGTTGCAGATTGAGGTGGATTAACTATCTCAAACCTGACATCAAACGAGGAAACTTCAGCGCCGAGGAAGACCGCACCATTATTCAACTTCATGCTCTCCTTGGAAACAAATGGTCAATCATAGCAGCTCACCTGCCCCAAAGAACAGACAATGAGATAAAGAACTATTGGAATACCAACATCAAGAAAAGACTCATCACAATGGGCTTAGATCCCATTTCCCACAAAACAATAAAACCCAACACGTTTGAAGCCTGCGGTGATGGCCATGACCAGTCCAAAGACACCATCAACATCTACCACATGGCTCAATGGGAAAGTGCTCGACTTGAAGCTGAAGCCAGAGGATCTATGGTGCAAGTTGGATCGGGATCCTCGCGTTCCTCTGGGCTAATTTTAAGCAAAATTCCAATCCAACCTTGTCTTTCATCACATTCAGTGTCAACCGAACCCAATACAGTGTATAACATGTATGCCCTGGTGCTTGCCCCAAATCATGATTTTCGGTCATCTGTATCCACTTTGAGCTTTCCCAGGTTTCCTGCAGTTTCTAATACTCCACAAATCACGAATAAAGAAAGTTCACTTTCATATAAGAGTGATAATAGTTTCATGGGAGCTAGTGGCCAAAGAAAAAAGGTAATGGAAAGTTGGGTATCAAACTTACAAGATGATGACATTATGGTGGCTGTGGAAGCATTTAGAACAGCAAGGTCTGACAGTATCGAAGAGCTGTTTAAAGAACCCACTTCCGTTTAG 942 0.4374 MEDSRNFPLTLGRMRCCENVGLKKGPWTPEEDNKLLDYVRNHGHGKWRSVPAKAGLQRCGKSCRLRWINYLKPDIKRGNFSAEEDRTIIQLHALLGNKWSIIAAHLPQRTDNEIKNYWNTNIKKRLITMGLDPISHKTIKPNTFEACGDGHDQSKDTINIYHMAQWESARLEAEARGSMVQVGSGSSRSSGLILSKIPIQPCLSSHSVSTEPNTVYNMYALVLAPNHDFRSSVSTLSFPRFPAVSNTPQITNKESSLSYKSDNSFMGASGQRKKVMESWVSNLQDDDIMVAVEAFRTARSDSIEELFKEPTSV 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00949 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 75 IPR017930 -
Viun2g00949 313 Pfam Myb-like DNA-binding domain 24 71 IPR001005 -
Viun2g00949 313 Pfam Myb-like DNA-binding domain 77 120 IPR001005 -
Viun2g00949 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 126 IPR017930 -
Viun2g00949 313 Gene3D - 23 76 - -
Viun2g00949 313 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Viun2g00949 313 Gene3D - 79 126 - -
Viun2g00949 313 SMART sant 23 73 IPR001005 -
Viun2g00949 313 SMART sant 76 124 IPR001005 -
Viun2g00949 313 SUPERFAMILY Homeodomain-like 21 118 IPR009057 -
Viun2g00949 313 CDD SANT 79 122 IPR001005 -
Viun2g00949 313 FunFam MYB transcription factor 78 139 - -
Viun2g00949 313 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 12 248 - -
Viun2g00949 313 ProSiteProfiles Myb-like domain profile. 19 71 IPR001005 -
Viun2g00949 313 CDD SANT 26 71 IPR001005 -
Viun2g00949 313 FunFam MYB-related transcription factor 23 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00949 Viun-Chr2 20227949 20229421 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00949 11 176 MYB Transcription Factor Family AT3G01140 68.675 1.08e-83 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun2g00949 Myb_DNA-binding 5.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00949 K09422 - gmx:100790887 414.846