Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00944 ATGGGAAGGCCACCATGCTGTGAGAAGACAGGGCTCAAGAAAGGACCATGGACACCAGAAGAAGACCAAAAGCTCATTGCTTTCATTGAAAACCATGGCCATGGAAGCTGGCGTGCTTTGCCACCAAAAGCCGGGCTTAGAAGATGTGGAAAGAGTTGCAGACTTAGGTGGACTAATTATCTGAGACCTGATATAAAAAGAGGAAAGTTCAGCTTGCAGGAAGAGCAAACCATTATTCAACTTCATGCTCTTCTAGGAAACAGATGGTCAGCCATAGCATCTCACTTGGCGAAGAGAACAGACAATGAGATCAAGAACTATTGGAACACCCACCTCAAGAAAAGGCTCGACAAAATGGGCATAGACCCCACCACCCACAAGCCAAAAATGGAGTCCCTTATCCACTTCAAAGACGGTTCAAACCTCAGCCACATGGCTCAGTGGGAGAGTGCTCGCCTCGAAGCCGAAGCCAGACTCGTACGAGAATCCAAGTTGCAGGAACAAAACAACCTCGTATTAACCTCTTCCTCACCACCACCACCACCACCACAACAACAACAACCTAGACTCGTTCTCAACAAAATCACACCCCTACACCACCACCACCAACCCTCACTACCACCGTGCCTCGACGTTCTCAAAGCATGGCAAAGTTCATGCTCAGACAACAAAAACAACAATAACAACATATACTCATCGCTACACGACAAGAAGAAAACCATGCATGTGCATAGCATGTATGCGATGATGCTTGCCACCGATGACCTTGAATCCCCAACATCCACCCTGTGCTTCCCTGAGAGTATGCAAATCAATGACAGTAACAATAATAATAGCAATAACATTATGGTGTCGACCAACCAAGTTGGGTTAATCAATGAGAACTATTTACTTCCTCCATCTGCTGTGGAAGAGTTTCTGACCAAAAGTGTCGGAACGTGTGGTGAGGGTTCAACCGTGAAGGAAGATGCTTGTTGTGGCGGTGATGGTGACAGCAGTGAGTCGTGGAGGTACTTCACCAAACACAGCACTGATCGTGATGAAGAAGTCGCTGAAACTGAGAAGAGAATTATGTACCAGACGATGCCATGTTTGCAAGATGATGACATAATGGAGGCTGTTGATGCGTTAAGAGGTGGTGGTTATTATGGTAATAATACTGATACTATTAATAATGATGTGGTGCCATTTACACCTCTATCTAGCAATGTCGATATGGTTGTTGGTTTCAATAACGACATGCAGGATTTTGATTCCAACCAAGATTTAGCAGCGGACAACTTGGAAGTGAACTTCGAAGAGAATAAGGATTATTGGAATAGCATGCTTGGTTATAAGTGA 1341 0.4497 MGRPPCCEKTGLKKGPWTPEEDQKLIAFIENHGHGSWRALPPKAGLRRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIASHLAKRTDNEIKNYWNTHLKKRLDKMGIDPTTHKPKMESLIHFKDGSNLSHMAQWESARLEAEARLVRESKLQEQNNLVLTSSSPPPPPPQQQQPRLVLNKITPLHHHHQPSLPPCLDVLKAWQSSCSDNKNNNNNIYSSLHDKKKTMHVHSMYAMMLATDDLESPTSTLCFPESMQINDSNNNNSNNIMVSTNQVGLINENYLLPPSAVEEFLTKSVGTCGEGSTVKEDACCGGDGDSSESWRYFTKHSTDRDEEVAETEKRIMYQTMPCLQDDDIMEAVDALRGGGYYGNNTDTINNDVVPFTPLSSNVDMVVGFNNDMQDFDSNQDLAADNLEVNFEENKDYWNSMLGYK 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00944 446 CDD SANT 69 112 IPR001005 -
Viun2g00944 446 CDD SANT 16 61 IPR001005 -
Viun2g00944 446 Gene3D - 68 134 - -
Viun2g00944 446 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Viun2g00944 446 FunFam MYB-related transcription factor 13 66 - -
Viun2g00944 446 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Viun2g00944 446 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Viun2g00944 446 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Viun2g00944 446 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Viun2g00944 446 Gene3D - 11 67 - -
Viun2g00944 446 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Viun2g00944 446 SMART sant 13 63 IPR001005 -
Viun2g00944 446 SMART sant 66 114 IPR001005 -
Viun2g00944 446 FunFam MYB transcription factor 68 129 - -
Viun2g00944 446 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Viun2g00944 446 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00944 Viun-Chr2 20088401 20093242 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00944 1 179 MYB Transcription Factor Family AT3G01140 77.540 5.75e-99 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun2g00944 Myb_DNA-binding 2.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00944 K09422 - gmx:100792994 605.905