LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun2g00931	ATGAGCACCGGCAGCAGCAGATCGTCCGCCACGGCGGCGAAGGAGAAGGCTCGGGTGAGTCGGACGTCTCTCATTCTGTGGCACTCGCACCAAAACGATGCCGCGTCTGTGCGGAAGCTTCTTGAGGAGGATCCATCGCTGGTGAAGGCAAGGGATTACGACAGCCGCACGCCGCTGCATGTGGCTTCGCTCCACGGCTGGGTCGAGGTTGCTAACTGCTTGCTCGAATTCGGTGCTGACGTCAATGCTTTGGATCGTTGGAAAAACACTCCTTTGGCTGATGCAGAAGGAGCTAAAAAAATGCCGATAATCGACCTTTTGAAGTCAAATGGAGGCTTGTCTTATGGCCAAAATGGAAGTCATTCTGAAAAGGGCCAAAATGTTCTTCCCCCATTGCCTAACAAATGTGACTGGGAAGTTGACCCATCTGAGCTGGACTTCTCTCATTCAGTTTGCATTGGAAAGGGATCTTTTGGCGAGATCGTAAAAGCCCATTGGCGTGGAACGCCTGTTGCCGTCAAACGTATTCTTCCATCTCTGTCAGATGATAGATTGGTGATTCAGGACTTCAGGCACGAGGTTAATTTACTTGTGAAACTTCGACACCCTAATGTTGTTCAATTTCTTGGAGCTGTTACAGACAAGAAGCCTCTTATGTTAATTACTGAGTATCTAAGAGGAGGTGATCTTCATAAGTACCTCAAGGACAAAAGTTCTCTTAGTCCATCAGCAGCTATCAACTTTGGCTTGGATATTGCTAGAGGGATGGCCTATCTTCACAATGAACCAAATGTTATCATCCATCGAGACCTAAAGCCAAGGAATGTTCTTTTAGTCAATACTAGTGCCGACCATTTAAAAGTTGGTGATTTTGGACTTAGTAAGCTTATTAAGGTCCAAAGTTCTCATGATGTATACAAGATGACGGGTGAAACTGGAAGCTACCGCTACATGGCTCCTGAAGTTTTCAAACACCGGAGATATGATAAGAAGGTTGACGTGTTCTCCTTTGCAATGATTCTGTATGAGATGCTTGAAGGTGAACCGCCTTTTTCAAATTATGAACCATATGATGGAGCCAAATATGTGGCAGAAGGACACAGGCCTTCATTTCGATCAAAGAGTTATACCTCTGACCTGCGAGAAGGAGTGCTGGTCTTCTGA	1164	0.4613	MSTGSSRSSATAAKEKARVSRTSLILWHSHQNDAASVRKLLEEDPSLVKARDYDSRTPLHVASLHGWVEVANCLLEFGADVNALDRWKNTPLADAEGAKKMPIIDLLKSNGGLSYGQNGSHSEKGQNVLPPLPNKCDWEVDPSELDFSHSVCIGKGSFGEIVKAHWRGTPVAVKRILPSLSDDRLVIQDFRHEVNLLVKLRHPNVVQFLGAVTDKKPLMLITEYLRGGDLHKYLKDKSSLSPSAAINFGLDIARGMAYLHNEPNVIIHRDLKPRNVLLVNTSADHLKVGDFGLSKLIKVQSSHDVYKMTGETGSYRYMAPEVFKHRRYDKKVDVFSFAMILYEMLEGEPPFSNYEPYDGAKYVAEGHRPSFRSKSYTSDLREGVLVF	387

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Viun2g00931	387	CDD	STKc_MAP3K-like	153	369	-	-
Viun2g00931	387	FunFam	serine/threonine-protein kinase STY46-like	140	226	-	-
Viun2g00931	387	ProSitePatterns	Protein kinases ATP-binding region signature.	153	174	IPR017441	GO:0005524
Viun2g00931	387	SUPERFAMILY	Ankyrin repeat	25	111	IPR036770	-
Viun2g00931	387	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	60	375	-	-
Viun2g00931	387	SMART	ANK_2a	54	83	IPR002110	GO:0005515
Viun2g00931	387	Gene3D	-	2	124	IPR036770	-
Viun2g00931	387	Gene3D	Transferase(Phosphotransferase) domain 1	139	385	-	-
Viun2g00931	387	PIRSF	ILK	1	385	-	-
Viun2g00931	387	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	266	278	IPR008271	GO:0004672\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun2g00931	Viun-Chr2	20006042	20011692	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun2g00931	14	385	MAP Kinase Kinase Kinase	AT1G14000	82.527	0.0	645

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-5	Viun2g00931		PK_Tyr_Ser-Thr	1.6e-55	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun2g00931	-		-	gmx:100789273	695.271

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