Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00921 ATGGAAGAGGTAGAGGAGTGCACCAATGCTAACCAAAAATTCACCACCAGAAGAATGAGCTTCAGAAATGGAGTGAACTCTCATGAGCATCACCGATATCACCACCACCATCATCATCACTTTCAACACCATCATCATCTGCAACTGCAACAACTTCCTTTCACTCCACCCTTCCCTCAAAACCACATCATCAAATCAAAAACCCATTTTCACAAACCTCCATGCAAACTCAGTAGCTCCCCCTCCCTTGCTCCACCACCACTTGCTCCTGCTCCAAAGGAACTTCAGCAGCAATCTAAGGGATCCCTCAAAGGAAATGATGGGAAGAAACTCATTCCAGCAAGGAAGCCACAGTCAGTGCTTGTTGCAAAGAGGCCAGACTCTGGTGGCCAAGAAGGCTCTGTCATCTCTCTTCTTGCCAACCACTTTTTGGTACAATTTGATCCATCACAGAACATATATCATTACAATGTTGAAATCACTCCCCATCCCTCCAAGGATATCGCCAGAGCTATCAAGCACAAGTTGGTTAATAACAATTCTGCTGTCCTCTCAGGTGCTACTCCAGCATATGATGGCAGAAAGAATCTTTTCAGTCCAGTTGAGTTCCAAAATGATAAGCTGGAGTTCTACATAAGCCTCCCAATCCCCTCTGCCAAGCTTGCATCACCTTATGGAGAAATCTCTGACTTGAGAGAGAAGCATGAAAAGCTTAAACTTTTCAGGATAAATATCAAGTTGGTCTCAAAAATCAATGGGAAGGAGTTGACTAACTACTTGAGCAAAGAGGGTGATGACTGGATTCCACTTCCACAGGATTATCTGCATGCTTTGGATGTAGTTCTTAGGGAGAGCCCTACTGAGAAATGCATACCTGTTGGAAGGTCATTCTATTCAAGTTCAATGGGAAGAAGCAAAGACATTGGTGGAGGAGCTGTTGGATTGAGAGGCTTCTTTCAGAGTCTCAGGCCAACACAACAAGGATTAGCTCTCAATGTGGATTTCTCAGTAACTGCTTTCCATGAGAGCATCGGAGTGATTGCATACCTGCAGAAACGTCTTGAGTTCCTTCGAGACCTTTCTCAAAGGAAGACAGCTCAATTAACTGGTGAAGAGAGGAAGGAAGTTGAGAAGTCATTGAAGAACATCAGGGTCTTTGTTTGCCATAGGGAAACTGTTCAGAGATACCGTGTCTATGGCTTGACTGAGGAGGCTACTGAAAACCTTTGGTTTGCTGACAGAGATGGCAAGAATCTGAGGCTGGTTAATTACTTTAAAGATCACTATAACTATGACATACAATTCAGAAAATTGCCATGCTTGCAAATTAGTAGGAGTAAACCTTGTTATCTCCCTATGGAGCTTTGTGTGATCTGTGAAGGCCAGAAGTTCCTTGGAAAACTCAGTGATGATCAGACAGCACGAATACTCAAGATGGGCTGCCAAAGACCGGGAGAACGAAAAACCATTATTGAAGGAGTCATGAGAGGAAATGTTGGGCCTACCAGTGGTGATCAGGAAAAAGAGTTCAATCTCCAAGTGTCCAGAGAAATGACAAAGTTGACTGGCAGAATTCTTTTCCCTCCCAAACTAAAGCTTGGAGATGGAGGTCATGTGAGAAACTTGACTCCTTCGCGCCATGACCGGCAATGGAACCTTCTGGATGGCCATGTCTCTGAAGGAACTACTATTGAAAGGTGGGCACTGATTAGTTTTGGGGGCACGCCTGAGCAGAAGTCCAGTGTCCCCAGATTCATAAACCAGTTATCTCAAAGGTGTGAACAATTGGGCATTTTTCTCAACAAGAACACAGTTATTACTCCCCAGTTTGAATCAAGCCAGATTCTTAACAATGTCACCCTTTTAGAATCTAAGCTCAAGAGGATCCAGAGGACTGCCTCAAACAATCTCCAGCTTCTTATTTGCATAATGGAGAGAAAACACAAAGGGTATGCAGACTTGAAACGAATTGCCGAGACCAGTGTTGGTGTTGTGAGCCAATGCTGCCTTTACCCCAATCTCAGCAAGTTGAGTTCACAATTTTTGGCTAATTTGGCCCTCAAAATCAACGCCAAAGTTGGTGGATGCACGGTTGCTTTGTACAACTCATTGCCTTCACAGTTACCACGTCTCTTTCATATCGATGAGCCAGTGATATTCATGGGTGCAGATGTGACACATCCTCACCCTCTTGATGATTTTAGTCCATCTGTTGCTGCTGTTGTCGGTAGCATGAATTGGCCGACAGCAAACAAATACATTTCAAGAATAAGGTCTCAAACACACAGACAAGAAATCATTCACGATCTTGGTGCAATGGTGGGGGAACTTCTCGATGATTTTTACCAGGAGGTAGAGAAACTCCCCAGCAGAATTATTTTCTTCAGAGATGGAGTCAGTGAAACTCAGTTTTACAAAGTGTTGGAAGACGAACTTCAGTCAATCAGGTGTGCATGCACAAGGTTTCCTGGTTACAAACCTTCCATTACTTTTGTAGTTGTGCAAAAGAGGCATCACACAAGGTTGTTTCCCCTTGAAACTGACCACTCTTCAACTCAAAACCATTTTCTATATGAAAACATTCCTCCAGGGACTGTGGTTGATTCAGTGATCACTCATCCAAATGAATTTGATTTCTACCTTTGTAGCCATTGGGGTGTGAAAGGAACAAGTAGGCCAACTCACTACCATGTCTTATGGGATGAAAACCAGTTTACTTCTGATGAACTGCAGAAACTGGTTTACAACTTATGCTACACTTTTGTCAGGTGCACCAAGCCAATTTCTTTGGTGCCTCCAGCATATTATGCACATTTAGCTGCATATAGAGGCAGACTCTACCTCCAGAGATCAGAGTCCTTAGGTTTGTTCAGAAATACATCTACGTTATCCAGAGCTGCTCCTCCCAAGACAGCACCTCTACCAAAACTTAGTGAAAACATCAAGAAGCTCATGTTCTACTGCTAG 2967 0.4351 MEEVEECTNANQKFTTRRMSFRNGVNSHEHHRYHHHHHHHFQHHHHLQLQQLPFTPPFPQNHIIKSKTHFHKPPCKLSSSPSLAPPPLAPAPKELQQQSKGSLKGNDGKKLIPARKPQSVLVAKRPDSGGQEGSVISLLANHFLVQFDPSQNIYHYNVEITPHPSKDIARAIKHKLVNNNSAVLSGATPAYDGRKNLFSPVEFQNDKLEFYISLPIPSAKLASPYGEISDLREKHEKLKLFRINIKLVSKINGKELTNYLSKEGDDWIPLPQDYLHALDVVLRESPTEKCIPVGRSFYSSSMGRSKDIGGGAVGLRGFFQSLRPTQQGLALNVDFSVTAFHESIGVIAYLQKRLEFLRDLSQRKTAQLTGEERKEVEKSLKNIRVFVCHRETVQRYRVYGLTEEATENLWFADRDGKNLRLVNYFKDHYNYDIQFRKLPCLQISRSKPCYLPMELCVICEGQKFLGKLSDDQTARILKMGCQRPGERKTIIEGVMRGNVGPTSGDQEKEFNLQVSREMTKLTGRILFPPKLKLGDGGHVRNLTPSRHDRQWNLLDGHVSEGTTIERWALISFGGTPEQKSSVPRFINQLSQRCEQLGIFLNKNTVITPQFESSQILNNVTLLESKLKRIQRTASNNLQLLICIMERKHKGYADLKRIAETSVGVVSQCCLYPNLSKLSSQFLANLALKINAKVGGCTVALYNSLPSQLPRLFHIDEPVIFMGADVTHPHPLDDFSPSVAAVVGSMNWPTANKYISRIRSQTHRQEIIHDLGAMVGELLDDFYQEVEKLPSRIIFFRDGVSETQFYKVLEDELQSIRCACTRFPGYKPSITFVVVQKRHHTRLFPLETDHSSTQNHFLYENIPPGTVVDSVITHPNEFDFYLCSHWGVKGTSRPTHYHVLWDENQFTSDELQKLVYNLCYTFVRCTKPISLVPPAYYAHLAAYRGRLYLQRSESLGLFRNTSTLSRAAPPKTAPLPKLSENIKKLMFYC 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00921 988 MobiDBLite consensus disorder prediction 28 46 - -
Viun2g00921 988 SMART PAZ_2_a_3 351 482 IPR003100 GO:0005515
Viun2g00921 988 Pfam Piwi domain 640 946 IPR003165 GO:0003676
Viun2g00921 988 Pfam PAZ domain 354 476 IPR003100 GO:0005515
Viun2g00921 988 FunFam protein argonaute 10-like 710 988 - -
Viun2g00921 988 ProSiteProfiles PAZ domain profile. 351 460 IPR003100 GO:0005515
Viun2g00921 988 Pfam N-terminal domain of argonaute 136 282 IPR032474 -
Viun2g00921 988 Gene3D paz domain 337 464 - -
Viun2g00921 988 SMART Piwi_a_2 639 949 IPR003165 GO:0003676
Viun2g00921 988 MobiDBLite consensus disorder prediction 28 131 - -
Viun2g00921 988 CDD Piwi_ago-like 508 948 IPR045246 -
Viun2g00921 988 SMART DUF1785_2 291 343 IPR014811 -
Viun2g00921 988 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 114 951 - -
Viun2g00921 988 SUPERFAMILY PAZ domain 338 496 IPR036085 GO:0005515
Viun2g00921 988 FunFam Protein argonaute 7 338 464 - -
Viun2g00921 988 CDD PAZ_argonaute_like 354 459 - -
Viun2g00921 988 ProSiteProfiles Piwi domain profile. 639 949 IPR003165 GO:0003676
Viun2g00921 988 FunFam Argonaute 10 525 701 - -
Viun2g00921 988 Gene3D - 711 988 IPR036397 GO:0003676
Viun2g00921 988 Pfam Argonaute linker 1 domain 292 341 IPR014811 -
Viun2g00921 988 SUPERFAMILY Ribonuclease H-like 624 947 IPR012337 -
Viun2g00921 988 Gene3D - 525 701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00921 Viun-Chr2 19910670 19915760 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00921 77 988 Eukaryotic Initiation Factors Gene Family AT1G48410 40.818 0.0 642
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00921 K11593 - gmx:100796107 1752.64