Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00865 ATGGACATGCCGTCTTCGAGTTCAACCCATGTTGGCGCTGCGTCTTCTGCGTACAGAGGAGTGCGCAAGAGAAAATGGGGCAAGTGGGTCTCCGAAATCCGCGAGCCCGGAACCAAGACCCGGATTTGGCTCGGCAGTTTCGAGACGCTGGAGATGGCCGCCGCCGCCTACGACGTGGCGGCGTTGCATTTCCGTGGCCGCGACGCCAGACTGAACTTCCCCGAGCTCGCAAGCACGCTGCCGCGCCCCGTCAGCAACAATGCCGACCACATACGCATGGCGGCGCACGAGGCGGCCCTGCGGCTCCGGACCAACCCCGCCCCGCCGGAGACCGGAGGAGGCATTTCCCCCACGGCGGCGCCGCTGACGGTGAGACTCTCCCCCACTCAGATTCAGGCCATCAATGACTCCCCCATGGACTCGCCTCAGACGTGGATGCAAATGCCGGACACTTTCATGATGCACGATCAATCCATGATGTTCGCAAATGGTTATGCCTTTGAAGACAACGAGTGGGAGCATATGCAGAATGATTCTCTCTGGGATCCTTAG 552 0.6105 MDMPSSSSTHVGAASSAYRGVRKRKWGKWVSEIREPGTKTRIWLGSFETLEMAAAAYDVAALHFRGRDARLNFPELASTLPRPVSNNADHIRMAAHEAALRLRTNPAPPETGGGISPTAAPLTVRLSPTQIQAINDSPMDSPQTWMQMPDTFMMHDQSMMFANGYAFEDNEWEHMQNDSLWDP 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00865 183 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
Viun2g00865 183 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
Viun2g00865 183 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
Viun2g00865 183 Gene3D AP2/ERF domain 17 75 IPR036955 GO:0003700|GO:0006355
Viun2g00865 183 FunFam Ethylene-responsive transcription factor 2 16 75 - -
Viun2g00865 183 PRINTS Ethylene responsive element binding protein signature 56 76 IPR001471 GO:0003700|GO:0006355
Viun2g00865 183 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Viun2g00865 183 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 159 - -
Viun2g00865 183 CDD AP2 16 76 IPR001471 GO:0003700|GO:0006355
Viun2g00865 183 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00865 Viun-Chr2 19373755 19375479 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00865 16 183 AP2-EREBP Transcription Factor Family AT1G71450 61.850 1.23e-63 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun2g00865 AP2 4.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00865 - - gmx:100801245 341.658