Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00860 ATGGAAGACAAGGACAGAGCAACCTCCGATCCCGCCGCGGTTGAGTTTGCCGGCGACACGAGTTGGACATTCGCCGCCGATGGCTCAGACGCCGCCTACTTGTTCTCCGGCGATGGAGAGCGAAGCGTACTCAGGGAATTCGGGTGGAACCTCGAACCGGACCAGTTGAACCGGATCGGCACCGACGACGGATTGTGGATGCCGGTTCAATCCTCTCTGACCTGTTCGATTGAACCGGCCGCTGCTGCATCGTCGCGGTCGAATAACCAGTCGGTGTCGTCGAGCTCCAGCGAGGATCAGCCGGAGAAATCCACAGTCTCTGACGAGAAACCGCCTGAGATACCTGATATATTTTGTAGGATTAAAGGTAAAAAGAAGGGGCAAAAGCGAATACGGCAGCCACGGTTTGCATTTATGACCAAGAGTGAAGTTGATCATCTTGAAGATGGCTACAGATGGCGGAAGTATGGTCAGAAGGCAGTTAAAAATAGCCCATTCCCTAGGAGCTACTACCGCTGCACAAACAGCAAATGCACGGTGAAGAAGAGGGTTGAACGCTCTTCCGAGGACCCAACGATTGTGATTACCACATATGAAGGCCAACACTGTCATCACACCGTTGGATTTCCTCGAGGAGGAATCATTAGTCACGAGGCTGCTGCCTTTGCGGGCCAGTTGGCTCCTACAATGTCGCAGTTTTATTATCCAATTCATTTACCCAGAGAGACTAATAATATAAATACTGTCAGCTCCATCTCTCAGCCATGCCAAGCACAGGATGATGCATCTGGAGGATCCAGCGCTGTAATGCCAGCTGATGCATCGTCACTGCAGCCTCCTACGGATGAAGGTTTGCTTGGAGATATTGTACCTCCGGGAATGCGTACCAGATGA 894 0.5179 MEDKDRATSDPAAVEFAGDTSWTFAADGSDAAYLFSGDGERSVLREFGWNLEPDQLNRIGTDDGLWMPVQSSLTCSIEPAAAASSRSNNQSVSSSSSEDQPEKSTVSDEKPPEIPDIFCRIKGKKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGFPRGGIISHEAAAFAGQLAPTMSQFYYPIHLPRETNNINTVSSISQPCQAQDDASGGSSAVMPADASSLQPPTDEGLLGDIVPPGMRTR 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00860 297 SUPERFAMILY WRKY DNA-binding domain 139 205 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun2g00860 297 ProSiteProfiles WRKY domain profile. 142 207 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun2g00860 297 FunFam WRKY transcription factor 57 133 207 - -
Viun2g00860 297 Gene3D WRKY domain 134 200 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun2g00860 297 MobiDBLite consensus disorder prediction 253 297 - -
Viun2g00860 297 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 84 244 IPR044810 GO:0003700
Viun2g00860 297 MobiDBLite consensus disorder prediction 80 101 - -
Viun2g00860 297 MobiDBLite consensus disorder prediction 253 274 - -
Viun2g00860 297 MobiDBLite consensus disorder prediction 80 128 - -
Viun2g00860 297 Pfam WRKY DNA -binding domain 148 204 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun2g00860 297 SMART WRKY_cls 147 206 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun2g00860 297 MobiDBLite consensus disorder prediction 102 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00860 Viun-Chr2 19272220 19279345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00860 9 295 WRKY Transcription Factor Family AT1G69310 47.267 1.42e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun2g00860 WRKY 1.9e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00860 - - gmx:100170676 471.47