Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00832 ATGAATGTTCTGGGGGCCTATGTGGGTCTTGGGGTCTATATATCTATCTTGAAGGCTTACTGTAAAGAAAATAGAACTGCTGAGGCTACTCAATTGGTGATGGAGATTAGTAATTCAGGTCTTCTGTTGAATGTGGGAACCTATGATGCTTTGATAGAAGCATCCATGTGCATCCAAGATTTTCAGTCAGCGTTTTCACTGTTTAAGGACATGAGAGAGGCAAGGATTCCTGACTTGAAATGGAGTTACTTAACTATAATGACAGGTTTGATGGAAAAACATCGGCCTGAGTTGATGGCAGCTTTCTTGGATGAGGTGGTTGATAGGATTGATGTAGGTACTCATGATTGGAATTCTATCATCTATGCTTTCTGTAAAGCTGGGAGACTTGAAGATGCAAGAATGACTTTTAGAAGGATGATGTTCCTGCAAGGATCAGACATACTTGTCTATGATTAA 459 0.4009 MNVLGAYVGLGVYISILKAYCKENRTAEATQLVMEISNSGLLLNVGTYDALIEASMCIQDFQSAFSLFKDMREARIPDLKWSYLTIMTGLMEKHRPELMAAFLDEVVDRIDVGTHDWNSIIYAFCKAGRLEDARMTFRRMMFLQGSDILVYD 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00832 152 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 113 143 IPR002885 -
Viun2g00832 152 NCBIfam pentatricopeptide repeat 117 141 IPR002885 -
Viun2g00832 152 NCBIfam pentatricopeptide repeat 13 44 IPR002885 -
Viun2g00832 152 Pfam PPR repeat 117 140 IPR002885 -
Viun2g00832 152 PANTHER BNAC05G43320D PROTEIN 1 144 - -
Viun2g00832 152 Pfam Pentatricopeptide repeat domain 32 76 IPR002885 -
Viun2g00832 152 Gene3D Tetratricopeptide repeat domain 1 146 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00832 Viun-Chr2 18998924 18999574 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00832 12 140 Miscellaneous Gene Families AT4G11690 23.664 8.33e-07 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00832 - - vun:114173290 305.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g00832 2 18998924 18999574 Viun2g00832 2 18998924 18999574 ECH