Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00825 ATGGAAAGCTGTACCAGCAACAGCAGTGATAACAACAATCACTGGAGAGCCGAGGATGCCATTGGTGGCAACGCTGAAGCTCTTCAGGCCCTTAGAGAACTCATCATATTCCCTCATCATTTCTCTCGAGAGGCACAGAAGCTTGGCCTTAAGTGGTCCAGAGGATTGCTGCTGTACGGTCCACCAGGCACGGGAAAGACAAGTTTGGTACGAGCAGTTGTTCGGGAGTGTGGGGCACATTTGACAATTATCAGAAGGGAACAAGATGTTCGACTTGCCTCTCAACTATTTACTCTGATGGACTCAAATAAACCAACCTATTCTACACCAGGTGTAGTTGTGGTTGCATCAACTAACAGAGTGGATGCAATTGACCCTGCACTAAGAAGGTATGGACGTTTTGATGCTGAAATAGAAGTTACTGTACCAAATGAAGAGGACCGCTATCAAATTCTGAAGTTGTATACGAAGAAAATTCCCTTGGATCCCAGTATTGACTTAAAGTCTATTGCTGCATTGTGCAATGGGTATGTTGGAGCTGATTTGGAGGCTTTGTGTTGTGAAGCTACCATGATTGCTAGTAAAAGATCCTCAAATGCAAAAGATGCTAGTAATTTCAGTCTAACAATGGAAGATTGGAAGAATGCAAGGTCTGTTGTTGGTCCCAGTATAACAAGAGGTGTTACTGTGGAAATTCCCAAAGTGACTTGGGAAGACATTGGTGGATTAAAAGAAGTAAAGAAAAAACTCCAGCAAGCTGTCGAATGGCCTATTAAGCATGCTGCTGCATTTTCAAGATTCGGAATATCCCCTGTACGTGGAATTCTTCTCCATGGGCCTCCAGGATGTTCCAAAACTACGCTTGCCAAAGCGGCTGCACATGCTGCTCAAGCATCTTTCTTTTCCTTAAGTGCTGCAGAATTGTATTCAATGTATGTTGGAGAGGGGGAAGCTTTACTTCGGAAAACATTTCATAGAGCACGCCTTGCAGCACCCAGTATAATATTCTTCGACGAGGCTGATGTGGTAGCTGCCAAACGGGGTGACAGTTCAAGTAATAGTGCTACAGTTGGAGAGAGACTTTTATCCACACTGCTAACTGAGATTGATGGCTTAGAAGAAACAAAAGGAATTCTTGTTTTAGCCGCTACAAATCGTCCTTATGCAATTGACGCTGCCCTAATGCGTCCTGGGCGTTTTGATCAGGTTCTGTATGTGCCACCACCTGATTTAGAGGCTAGATACGAGATACTCTGTCTTCATACGCGGAAGATGAGAATAGGGCATGATGTTGACTTCAGAAGGCTAGCAGAAGACACAGAACTGTTTACAGGTGCTGAACTGGAGGGACTATGCAGGGAAGCTGGAATTGTAGCTCTAAGGGAAGACATATCTGCTGCTGTTGTGTTTGATCGCCATTTCCAGATTGCAAAGAGTTCTTTAAAACCAGCGTTAACAAAACAAGAAATTGACTCCTACTCATCTTTCAAGAAGACATCATCTCGAGTTTTGCCTAGCCACTCAGAAGCAGGTTTGAAAGCAGACAAGGGCAAAAGAAACAGGTCAGATTCTCTGTCTTTGGTCAAAATTGGGGTTGTTAGCTGTTTCTTAGTGGCTGCTGCTAAATACATATATCTATGGGGAAACCAAAGTCTACCTGACATACCTACCTGA 1674 0.4385 MESCTSNSSDNNNHWRAEDAIGGNAEALQALRELIIFPHHFSREAQKLGLKWSRGLLLYGPPGTGKTSLVRAVVRECGAHLTIIRREQDVRLASQLFTLMDSNKPTYSTPGVVVVASTNRVDAIDPALRRYGRFDAEIEVTVPNEEDRYQILKLYTKKIPLDPSIDLKSIAALCNGYVGADLEALCCEATMIASKRSSNAKDASNFSLTMEDWKNARSVVGPSITRGVTVEIPKVTWEDIGGLKEVKKKLQQAVEWPIKHAAAFSRFGISPVRGILLHGPPGCSKTTLAKAAAHAAQASFFSLSAAELYSMYVGEGEALLRKTFHRARLAAPSIIFFDEADVVAAKRGDSSSNSATVGERLLSTLLTEIDGLEETKGILVLAATNRPYAIDAALMRPGRFDQVLYVPPPDLEARYEILCLHTRKMRIGHDVDFRRLAEDTELFTGAELEGLCREAGIVALREDISAAVVFDRHFQIAKSSLKPALTKQEIDSYSSFKKTSSRVLPSHSEAGLKADKGKRNRSDSLSLVKIGVVSCFLVAAAKYIYLWGNQSLPDIPT 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00825 557 Gene3D - 410 501 - -
Viun2g00825 557 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 233 494 IPR027417 -
Viun2g00825 557 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 60 79 - -
Viun2g00825 557 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 356 375 - -
Viun2g00825 557 Gene3D - 144 224 - -
Viun2g00825 557 SMART AAA_5 271 410 IPR003593 GO:0016887
Viun2g00825 557 SMART AAA_5 52 144 IPR003593 GO:0016887
Viun2g00825 557 Pfam AAA+ lid domain 164 206 IPR041569 -
Viun2g00825 557 Pfam AAA+ lid domain 430 474 IPR041569 -
Viun2g00825 557 Gene3D - 6 86 IPR027417 -
Viun2g00825 557 Pfam ATPase family associated with various cellular activities (AAA) 87 140 IPR003959 GO:0005524|GO:0016887
Viun2g00825 557 Pfam ATPase family associated with various cellular activities (AAA) 56 84 IPR003959 GO:0005524|GO:0016887
Viun2g00825 557 Pfam ATPase family associated with various cellular activities (AAA) 275 407 IPR003959 GO:0005524|GO:0016887
Viun2g00825 557 PANTHER AAA-FAMILY ATPASE 86 500 - -
Viun2g00825 557 FunFam spermatogenesis-associated protein 5-like protein 1 409 495 - -
Viun2g00825 557 ProSitePatterns AAA-protein family signature. 378 396 IPR003960 GO:0005524|GO:0016887
Viun2g00825 557 Gene3D - 225 409 IPR027417 -
Viun2g00825 557 Gene3D - 87 143 IPR027417 -
Viun2g00825 557 FunFam Cell division control protein 48-B-like protein 225 409 - -
Viun2g00825 557 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 19 224 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00825 Viun-Chr2 18888425 18899105 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00825 206 504 Calmodulin-binding Proteins AT3G56690 45.819 3.11e-82 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00825 - - vra:106755317 975.696