Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00824 ATGGAAAGCTGTACCAGCAACAGCAGTGATAACAACAATCACTGGAGAGCCGAGGATGCCATTGGTGGCAACGCTGAAGCTCTTCAGGCCCTTAGAGAACTCATCATATTCCCTCATCATTTCTCTCGAGAGGCACAGAAGCTTGGCCTTAAGTGGTCCAGAGGATTGCTGCTGTACGGTCCACCAGGCACGGGAAAGACAAGTTTGGTACGAGCAGTTGTTCGGGAGTGTGGGGCACATTTGACAATTATCAGTCCACACACTGTTCACAGAGCACATGCTGGTGAGAGTGAGAGAATTCTCCGTGAGGCTTTTTCTGAGGCATCATCTCATTTAGCCTGGGGCAAGCCATCCGTTATCTTTATAGATGAAATAGATGCGTTGTGTGCTCGCCGAGATTCCAAAAGGGAACAAGATGTTCGACTTGCCTCTCAACTATTTACTCTGATGGACTCAAATAAACCAACCTATTCTACACCAGGTGTAGTTGTGGTTGCATCAACTAACAGAGTGGATGCAATTGACCCTGCACTAAGAAGGTATGGACGTTTTGATGCTGAAATAGAAGTTACTGTACCAAATGAAGAGGACCGCTATCAAATTCTGAAGTTGTATACGAAGAAAATTCCCTTGGATCCCAGTATTGACTTAAAGTCTATTGCTGCATTGTGCAATGGGTATGTTGGAGCTGATTTGGAGGCTTTGTGTTGTGAAGCTACCATGATTGCTAGTAAAAGATCCTCAAATGCAAAAGATGCTAGTAATTTCAGTCTAACAATGGAAGATTGGAAGAATGCAAGGTCTGTTGTTGGTCCCAGTATAACAAGAGGTGTTACTGTGGAAATTCCCAAAGTGACTTGGGAAGACATTGGTGGATTAAAAGAAAAAAAACTCCAGCAAGCTGTCGAATGGCCTATTAAGCATGCTGCTGCATTTTCAAGATTCGGAATATCCCCTGTACGTGGAATTCTTCTCCATGGGCCTCCAGGATGTTCCAAAACTACGCTTGCCAAAGCGGCTGCACATGCTGCTCAAGCATCTTTCTTTTCCTTAAGTGCTGCAGAATTGTATTCAATGTATGTTGGAGAGGGGGAAGCTTTACTTCGGAAAACATTTCATAGAGCACGCCTTGCAGCACCCAGTATAATATTCTTCGACGAGGCTGATGTGGTAGCTGCCAAACGGGGTGACAGTTCAAGTAATAGTGCTACAGTTGGAGAGAGACTTTTATCCACACTGCTAACTGAGATTGATGGCTTAGAAGAAACAAAAGGAATTCTTGTTTTAGCCGCTACAAATCGTCCTTATGCAATTGACGCTGCCCTAATGCGTCCTGGGCGTTTTGATCAGGTTCTGTATGTGCCACCACCTGATTTAGAGGCTAGATACGAGATACTCTGTCTTCATACGCGGAAGATGAGAATAGGGCATGATGTTGACTTCAGAAGGCTAGCAGAAGACACAGAACTGTTTACAGGTGCTGAACTGGAGGGACTATGCAGGGAAGCTGGAATTGTAGCTCTAAGGGAAGACATATCTGCTGCTGTTGTGTTTGATCGCCATTTCCAGATTGCAAAGAGTTCTTTAAAACCAGCGTTAACAAAACAAGAAATTGACTCCTACTCATCTTTCAAGAAGACATCATCTCGAGTTTTGCCTAGCCACTCAGAAGCAGGTTTGAAAGCAGACAAGGGCAAAAGAAACAGGTCAGATTCTCTGTCTTTGGTCAAAATTGGGGTTGTTAGCTGTTTCTTAGTGGCTGCTGCTAAATACATATATCTATGGGGAAACCAAAGTCTACCTGACATACCTACCTGA 1818 0.4417 MESCTSNSSDNNNHWRAEDAIGGNAEALQALRELIIFPHHFSREAQKLGLKWSRGLLLYGPPGTGKTSLVRAVVRECGAHLTIISPHTVHRAHAGESERILREAFSEASSHLAWGKPSVIFIDEIDALCARRDSKREQDVRLASQLFTLMDSNKPTYSTPGVVVVASTNRVDAIDPALRRYGRFDAEIEVTVPNEEDRYQILKLYTKKIPLDPSIDLKSIAALCNGYVGADLEALCCEATMIASKRSSNAKDASNFSLTMEDWKNARSVVGPSITRGVTVEIPKVTWEDIGGLKEKKLQQAVEWPIKHAAAFSRFGISPVRGILLHGPPGCSKTTLAKAAAHAAQASFFSLSAAELYSMYVGEGEALLRKTFHRARLAAPSIIFFDEADVVAAKRGDSSSNSATVGERLLSTLLTEIDGLEETKGILVLAATNRPYAIDAALMRPGRFDQVLYVPPPDLEARYEILCLHTRKMRIGHDVDFRRLAEDTELFTGAELEGLCREAGIVALREDISAAVVFDRHFQIAKSSLKPALTKQEIDSYSSFKKTSSRVLPSHSEAGLKADKGKRNRSDSLSLVKIGVVSCFLVAAAKYIYLWGNQSLPDIPT 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00824 605 Gene3D - 6 191 IPR027417 -
Viun2g00824 605 FunFam Cell division control protein 48 homolog B 13 191 - -
Viun2g00824 605 CDD RecA-like_CDC48_NLV2_r1-like 20 190 - -
Viun2g00824 605 ProSitePatterns AAA-protein family signature. 426 444 IPR003960 GO:0005524|GO:0016887
Viun2g00824 605 PANTHER AAA-FAMILY ATPASE 17 548 - -
Viun2g00824 605 FunFam spermatogenesis-associated protein 5-like protein 1 457 543 - -
Viun2g00824 605 Pfam ATPase family associated with various cellular activities (AAA) 323 455 IPR003959 GO:0005524|GO:0016887
Viun2g00824 605 Pfam ATPase family associated with various cellular activities (AAA) 56 190 IPR003959 GO:0005524|GO:0016887
Viun2g00824 605 SMART AAA_5 319 458 IPR003593 GO:0016887
Viun2g00824 605 SMART AAA_5 52 194 IPR003593 GO:0016887
Viun2g00824 605 Gene3D - 275 457 IPR027417 -
Viun2g00824 605 Pfam AAA+ lid domain 478 522 IPR041569 -
Viun2g00824 605 Pfam AAA+ lid domain 214 256 IPR041569 -
Viun2g00824 605 FunFam Cell division control protein 48-B-like protein 275 457 - -
Viun2g00824 605 Gene3D - 458 549 - -
Viun2g00824 605 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 60 79 - -
Viun2g00824 605 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 404 423 - -
Viun2g00824 605 Gene3D - 193 274 - -
Viun2g00824 605 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 19 274 IPR027417 -
Viun2g00824 605 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 283 542 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00824 Viun-Chr2 18888425 18899105 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00824 256 552 Calmodulin-binding Proteins AT3G56690 45.485 7.70e-79 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00824 - - vra:106755317 1085.86