Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00817 ATGTCAGATTCACAGTCCAGTACTGAGATCTTTACCATTCGGATTGTCTCCATCGACTATTACATGGCGCCGCCAATTCCTGACGCCGATATCTGTTATAGTAGCTTCCACGGTGGAGAGGTAAACGAGGTTCCTGTGATAAGAGTGTATGGTTCTACTCCTGCTGGCCAGAAAACTTGCTTGCACATGCACCGAGCTTTACCCTATTTATATGTGCCGTGTTCGGATATACCACTTCAACTGGACCAAGGTGATGCATTCACCTATAAGGTAGCTGCTTCTCTTGAGAAAGCCTTAAAGCTTAAAGGCAGTGCTGGTTCTACAAGACAGCATGTACATGGATGCAGCATTGTACGAGCAAAGAAATTTTATGGCTATCATTCACTTGAGGAGTTATTTGTAAAGATATACTTATATTATCCTCAAGATGTCTCTCGTGCAGCTAGTCTTCTCTTGGCTGGTGCTGTTCTTGATAAAAGTTTACAGCCATATGAATCACATATTCCCTTTATTCTTCAGTTTCTGGTTGATTACAACTTGTATGGCATGGGTCAATTGCACCTATCAAAGATGAAGTTTCGCCATCCAGTACCTGACACTTTAAAGAAATTAAATATTGATGGCCAGCATACAAAGGCAGATCTACCTGCTCATGCATGTTTAGAGTCAAAATATTGGATGTCTTCCACGATTCCATCTGAGTGGATATGGTTACCCACAAGCAAATTCAGTGCTTCTTCAATTGATGAAGGTCACTGTCCTAAACGCCAAAGCATCTGTGAGCTTGAAGGAGATGCTTCTGTGAATGAGATTCTTAATCAGCAGTTTAAAATGTATTCATCTCTCTCACAAACATGCTCAGATATCAACATGGTTCAGTCACTTGTACCAATATGGGAGGAACAAAAACGAACTGGGATTCATGAGGCTACTATGCCGTCTGATCCTGGCAAACCACTTCCAGAAGATGTTATGAAACTTTTCTCTGTTGGTCTTGACTTTGAGAAAAAATTTATGGAATTATGCACTGAAGTTGGAACCTCATTATTTTGTACTCCTTCTGGGAAGGAATCGAGGGAAACAGACATAATAGGATCAGCATCACCACCTGCTACATTATGCAAAAATGCCACATTGCAAACAGAAGGGATTGACGCCAATCTTGAAATGTTGACTATGGATGAAATTCAGTCAACTGAAATTATTGGATCGGTGGACATAAAAGCAGCTGTTGACAAGGAAGCGAAAAATCTTCTTAAGTGGCTTGCAACTTCTCAAGCTGTAGAGGATATAAACTCTGATGATGATCTTGCTTATGAAACAATCTTGACTCCCTTGTTGCCTGCTGCAACAATTGATAAAGTGTTGGAGGAAGCTAATAACGCCTATGAGAGTGAGTCCCAGAAGGAGTGTCAGGATATTCTAGATTCAACTGATGATATGCTTGAGTTGGAGTTACCAAAGGAAAAGCCTTCTCTTTCCTTTGGTTACAATTGTCCTAATGGAACTTCATCAAATTGGAAATTACCCCAAGTTGATGGTTCTAATGATGATGAGTTCTCAGGTCAATATGATAGTTTGGCTGGAACCTCTTCTCTAGCAGATATAAACAGTGAATTCAAAAGCGCCTCTGAGTACCATGTTCTGCATAGTACTGGCACGAGTACAATTAGTAAAGATAGAAGGAATAAAAAATGGGGGTCTTTGCCTTTGTCTGTGATTGATCAGGTTAATAATGATGGAGAACGAGCTAATTTACTTGTGACTCATCCAGTTGAAAGTGCTATTGGAGATTCTGCTTGCTCAGATCACCTAGCCATAAATGAAGTTAGAAATAGTGCTTGTATTTTAAGGAACAAGGACAAGAATGCTTCAGATTCGAAAGAAGTAAACAGATCAGTTACCGGTTCTTTGCGGGACTTGATGAGGCGAAAGCGATCGTATCGACTTGAACAATCTGAATACGACTCTGGAACTACTAAAAAGCTTCTTTTAGACAGGCATGAGGAACAAAATGCATGCTTTTGGCAAAAGCAACTGGATTTAAAAACAATGCAAATTGATGAAGAAGAAATGGAAAACCAAAAGATTTGTGAACTTGAAGTTAGCAATCATGCTAATTTATTGCATGGGAAACTGCTCCTTTCACCTGGCAGTGATGGTCCTTTACAAGGTAGTAGTCCAAAAGATGAATGTTTTGGTCAACATGAAATGGAAGGTGTAGAAGAAAGTACAGTATTGAGGAACTGTACAAAAGGAGGTTCTGCTTTAATGCATGATGGACCAGGGCTCCATAAGCCTGAAAAATTATGTTTAGATGATTCCATAGATCAATTTGTGGTTTGCAGGGATGAAAACCTTAAGGGTGGGTTGACATTTAGAAAACATGTAAGTTCTGATGCCTATATCCAAAGTCCCGTTTTAGACACTCAATTGATAACAGCTGCTGTTCATGAAGTCAGAGCTCCCGAGGGCAGTCCACAAACTGATTCTTCTGCTTCAACTAGCGTGCAAAACTCGTTCATTATTGATAGAGTGTCTGGTAAATATAATTACGTGCATCAAAGTTCTCACCAAAGCTTATCATTTGTGCAACATGATCAGATGACGTTTTGTGAGAATTCTGTGAAGAAAAGTGATGCAAATGATATGCAAGGACTGCTTAGTGAAAAACTGGATAATCACAAGGTGGGTGAAAATTTGTTGCATGAGATCATTGACTCTGAACCCACTGACCTAAAGGGTAATCACATGAAATTAACTGAAATAACCACAAGCAAGAACCCTATGGCTGATAAGAATCTTGAAAGTACAACAACCTGTAATTCCTATTTACATCTGGATGAAGATAGCTCTGATGTAATGACAGGGGATGATCTGAATGTCTTTCTTCCGATTTCTGCAAGGAATTCTAAGAAAGGGATGGAAACTTGCAACGAATATATTACAAATAAAACCCTTACATCTAATGGGACAAAGGTTGCCAACACTCACTATCAAAATGATGGCTCTCACCTTTACCTATTAACACCTAATATTTTGCCTCCTTCTGTGGATACTGTGCAAAGATGGCTACTTTGTAATGAAAGAGGGCATAGTGTTGAACATATACATCAAGAAACAGATGCAGAGAACAAGGATGTACCTAAATGTGCTTCTGAGACTGAAGCTCCTCTTAGGCCTAAGCTGCATGAGGATGCTGCAGAACAGAGCCCTCCATGCAATGGAGAAGGACAAACAGAAAGAGTGGAAACACACCTAGATGACTCACAAGATACCTCTCAGATATCTGCCCCTGATGGAAAATCAACCTTCACCCCTCTAAGTCAAATTGGATTTCGAGACCCTGCAAGTGTTGGCTGTGGACAGCAACTGACATTACTTAGTATAGAGATTCTTGCAGAGTCTAGAGCAGACCTTTTACCTGATCCTCAATTTGATGCCATCAACATTATAGCTCTTGGTATTCAGAATGATAGTGATTCTGTTGCTGAAGTTCTAGTTCTGTTACACAGTAAATTTGTACCTTGTCAAAGAAATTTTGATGGTCTATCTGGCTCTAAAGTATTGGTCTTCACTGATGAAAAGGTATTGTTAAAAGAATTTATAAAGATTGTGTCTTCATCTGACCCAGATATTTTGATGGGTTGGGATATTCAAGGGAGTTCTCTGGGTTTTCTAGCAGAAAGATCATCCCATCTTGGTTTGGGATTACTTAATAATCTGTCTCGCACTCCATCTGAGTCTTTGATTTCTTCTGATAATATGAAAACTTCTGAAAAAGATATCTTGGAGCTGGACATTGATGACACTCCTAGTCTAGATTGTTGTGTGCCAGAAAATTCAATAATCGAGGATGAATGGGGACGGACACATGCTAGTGGAGTTCATGTAGGAGGCAGAATTGTTCTTAATGTATGGCGATTGATCCGTGGAGAAGTTAAGTTGAACTTATATTCAGTTGAATCTGTAGCTGAATCTGTATTGAGGCGGAAAGTTCCTTCCTTTCACCACAAAGTGCTGACAAAGTGGTTTTCAAGTGGTCCTGGACGAGCAAGATATCGGTGTATCAAATATGTTATAGAGAGAGCAAAGCTGAACCTTGAGATATTAAACCAACTTGATATGGTGAATCGAACATCAGAACTTGCTCGTGTCTTTGGCATAGAGTTTTTCTCTGTTCTCTCTCGAGGATCACAATACCGTGTCGAATCCATGTTTCTGAGGTTGGCCCATACACAAAACTACCTTGCTATCTCACCTGGAAATCAACAGGTTGCTTCTCAACCTGCTATGGAGTGCCTTCCTCTAGTAATGGAACCAGAATCCGGATTTTATTCTGATCCTGTTGTTGTGCTTGACTTCCAGTCTTTATATCCATCCATGATAATTGCATACAATCTTTGCTTCTGCACTTGTCTGGGTAAAGTTGTGGGATCAAAGGCTAATACACTCGGGGTTAGTCCATTCTCACCAGAGCAACATGTTCTGCAGGAGTTAAAGGATCAAATCTTGCTCACTCCAAATGGTGTTATGTTTGTACCTTCCAAGGTTCGAAGAGGTATACTGCCCCGCTTATTGGAAGAAATCTTAACTACTAGAATTATGGTAAAACAAGCAATAAAAAAATTGGCTCCTGCAGAGAAAGTTCTTCAGCGGATATTTAATGCGAGACAGCTTGCTTTAAAGCTCATAGCGAATGTAACATATGGTTACACTGCTGCTGGATTTAGTGGTCGCATGCCCTGTGCAGAACTTGCAGACAGTATTGTTCAGTGTGGTCGTAGTACACTGGAAACGGCTATATCATTTGTAAATCAACATGAAAAGTGGAATGCTAGAGTTATTTATGGAGATACTGATAGTATGTTTGTCCTCCTTAGAGGACGCACTTTGAAAGAGTCTTTCCAAATTGGGAATGAGATTGCCTCTGCCATCTCTGCTATGAATCCTAATCCTGTCTCCTTGAAGATGGAGAAAGTTTATCACCCATGTTTCCTTCTTACTAAGAAACGATATGTTGGCTACAGTTATGAAAGTCCTCATCAAATGGATCCTGTTTTTGATGCTAAAGGTATTGAGACAGTTCGCAGGGACACATGTGGTGCAGTTGCAAAGATAATGGAGCAGTCTTTGAGACTCTTTTTTGAGCAACAGGATTTATTGGAGGTGAAGACTTACTTGCAACGTCAATGGAAGAGGATTCTTTCGGGCAAATTCTGCCTTAAAGATTTTATCTTTGCAAAGGAGGTTCGCTTGGGCACCTACAGTGCAAGAATGTCATCACTTCCTCCTGCTGCAATTGTGGCCACTAAGGCAATGACGGTTGACCGCAGGGCAGAACCACGTTATGCTGAGAGAATACCTTATGTTGTAATCCATGGGGAGCCTGGAGCCCGTTTGGTTGATATGGTTGTGAATCCCTTGGAAGTTTTGGCAATTGATTCCCCGTATAGAATAAATGATTTATATTATATTAATAAACAAATAATACCAGCTTTACAACGGGTATTTGGGCTTGTTGCTGCTGACCTCAACCATTGGTTTTCAGAGATGCCTCGTCCCACAAGGGAAGCTTCTGCAAAGCATAAATTAACTTCAAATTCCCATCGAACCAGAATTGATTATTACTATCTTTCAAAACATTGTGTATTATGTGGTAGGTTGGTCCAGGCATCAACCCATTTATGCAATCAATGTTCAGAAAATGAGGTAGCTGCTGCAACAGCAGTAATTGGTAGGACTTCGAAGTTAGAGAAAGCGATGCAACATCTTGTTGCTATATGTCACCATTGTGGAGGCGGGGATAGGCTTCTTGAAAATGGTGTGAAATGCACGTCCATTTCATGTTTGGTGTTCTTTGAGAGGCGGAAGGTTCAGAAAGAACTGCTAGCTGCTACCCATGTTGCTGCAGATAAAGACTTGTACCCGAGATGCACAGTGGAATGGTTCTGA 5955 0.4037 MSDSQSSTEIFTIRIVSIDYYMAPPIPDADICYSSFHGGEVNEVPVIRVYGSTPAGQKTCLHMHRALPYLYVPCSDIPLQLDQGDAFTYKVAASLEKALKLKGSAGSTRQHVHGCSIVRAKKFYGYHSLEELFVKIYLYYPQDVSRAASLLLAGAVLDKSLQPYESHIPFILQFLVDYNLYGMGQLHLSKMKFRHPVPDTLKKLNIDGQHTKADLPAHACLESKYWMSSTIPSEWIWLPTSKFSASSIDEGHCPKRQSICELEGDASVNEILNQQFKMYSSLSQTCSDINMVQSLVPIWEEQKRTGIHEATMPSDPGKPLPEDVMKLFSVGLDFEKKFMELCTEVGTSLFCTPSGKESRETDIIGSASPPATLCKNATLQTEGIDANLEMLTMDEIQSTEIIGSVDIKAAVDKEAKNLLKWLATSQAVEDINSDDDLAYETILTPLLPAATIDKVLEEANNAYESESQKECQDILDSTDDMLELELPKEKPSLSFGYNCPNGTSSNWKLPQVDGSNDDEFSGQYDSLAGTSSLADINSEFKSASEYHVLHSTGTSTISKDRRNKKWGSLPLSVIDQVNNDGERANLLVTHPVESAIGDSACSDHLAINEVRNSACILRNKDKNASDSKEVNRSVTGSLRDLMRRKRSYRLEQSEYDSGTTKKLLLDRHEEQNACFWQKQLDLKTMQIDEEEMENQKICELEVSNHANLLHGKLLLSPGSDGPLQGSSPKDECFGQHEMEGVEESTVLRNCTKGGSALMHDGPGLHKPEKLCLDDSIDQFVVCRDENLKGGLTFRKHVSSDAYIQSPVLDTQLITAAVHEVRAPEGSPQTDSSASTSVQNSFIIDRVSGKYNYVHQSSHQSLSFVQHDQMTFCENSVKKSDANDMQGLLSEKLDNHKVGENLLHEIIDSEPTDLKGNHMKLTEITTSKNPMADKNLESTTTCNSYLHLDEDSSDVMTGDDLNVFLPISARNSKKGMETCNEYITNKTLTSNGTKVANTHYQNDGSHLYLLTPNILPPSVDTVQRWLLCNERGHSVEHIHQETDAENKDVPKCASETEAPLRPKLHEDAAEQSPPCNGEGQTERVETHLDDSQDTSQISAPDGKSTFTPLSQIGFRDPASVGCGQQLTLLSIEILAESRADLLPDPQFDAINIIALGIQNDSDSVAEVLVLLHSKFVPCQRNFDGLSGSKVLVFTDEKVLLKEFIKIVSSSDPDILMGWDIQGSSLGFLAERSSHLGLGLLNNLSRTPSESLISSDNMKTSEKDILELDIDDTPSLDCCVPENSIIEDEWGRTHASGVHVGGRIVLNVWRLIRGEVKLNLYSVESVAESVLRRKVPSFHHKVLTKWFSSGPGRARYRCIKYVIERAKLNLEILNQLDMVNRTSELARVFGIEFFSVLSRGSQYRVESMFLRLAHTQNYLAISPGNQQVASQPAMECLPLVMEPESGFYSDPVVVLDFQSLYPSMIIAYNLCFCTCLGKVVGSKANTLGVSPFSPEQHVLQELKDQILLTPNGVMFVPSKVRRGILPRLLEEILTTRIMVKQAIKKLAPAEKVLQRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLETAISFVNQHEKWNARVIYGDTDSMFVLLRGRTLKESFQIGNEIASAISAMNPNPVSLKMEKVYHPCFLLTKKRYVGYSYESPHQMDPVFDAKGIETVRRDTCGAVAKIMEQSLRLFFEQQDLLEVKTYLQRQWKRILSGKFCLKDFIFAKEVRLGTYSARMSSLPPAAIVATKAMTVDRRAEPRYAERIPYVVIHGEPGARLVDMVVNPLEVLAIDSPYRINDLYYINKQIIPALQRVFGLVAADLNHWFSEMPRPTREASAKHKLTSNSHRTRIDYYYLSKHCVLCGRLVQASTHLCNQCSENEVAAATAVIGRTSKLEKAMQHLVAICHHCGGGDRLLENGVKCTSISCLVFFERRKVQKELLAATHVAADKDLYPRCTVEWF 1984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00817 1984 CDD DNA_polB_zeta_exo 1122 1372 - -
Viun2g00817 1984 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 5 1977 IPR030559 GO:0006281|GO:0016035|GO:0019985
Viun2g00817 1984 CDD POLBc_zeta 1398 1846 - -
Viun2g00817 1984 MobiDBLite consensus disorder prediction 1059 1107 - -
Viun2g00817 1984 Gene3D - 1692 1859 IPR042087 -
Viun2g00817 1984 PRINTS DNA-directed DNA-polymerase family B signature 1559 1571 IPR006172 GO:0000166|GO:0003676|GO:0003887
Viun2g00817 1984 PRINTS DNA-directed DNA-polymerase family B signature 1615 1623 IPR006172 GO:0000166|GO:0003676|GO:0003887
Viun2g00817 1984 PRINTS DNA-directed DNA-polymerase family B signature 1450 1463 IPR006172 GO:0000166|GO:0003676|GO:0003887
Viun2g00817 1984 FunFam DNA polymerase 1692 1860 - -
Viun2g00817 1984 Gene3D Helix hairpin bin 1516 1576 - -
Viun2g00817 1984 MobiDBLite consensus disorder prediction 1090 1107 - -
Viun2g00817 1984 Pfam DNA polymerase family B, exonuclease domain 55 207 IPR006133 -
Viun2g00817 1984 Pfam DNA polymerase family B, exonuclease domain 1123 1261 IPR006133 -
Viun2g00817 1984 SUPERFAMILY DNA/RNA polymerases 1437 1851 IPR043502 -
Viun2g00817 1984 Gene3D - 1155 1433 IPR036397 GO:0003676
Viun2g00817 1984 Gene3D Palm domain of DNA polymerase 1436 1681 IPR023211 -
Viun2g00817 1984 ProSitePatterns DNA polymerase family B signature. 1617 1625 IPR017964 GO:0000166|GO:0003676
Viun2g00817 1984 Pfam C4-type zinc-finger of DNA polymerase delta 1883 1956 IPR025687 -
Viun2g00817 1984 SMART polmehr3 1123 1629 IPR006172 GO:0000166|GO:0003676|GO:0003887
Viun2g00817 1984 FunFam DNA polymerase 1132 1433 - -
Viun2g00817 1984 Pfam DNA polymerase family B 1391 1838 IPR006134 GO:0000166|GO:0003677
Viun2g00817 1984 FunFam DNA polymerase 30 195 - -
Viun2g00817 1984 SUPERFAMILY Ribonuclease H-like 35 1397 IPR012337 -
Viun2g00817 1984 Gene3D DNA Polymerase, chain B, domain 1 30 195 - -
Viun2g00817 1984 FunFam DNA polymerase zeta 1517 1576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00817 Viun-Chr2 18832333 18850770 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00817 39 225 Core DNA Replication Machinery Family AT5G63960 26.562 4.37e-11 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00817 K02350 - gmx:100777934 3299.99