Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00816 ATGCAAGACATCTTCGGATCAGTTCGCAGATCACTGGTATTCCGCGGTTCGCCGGAGAGCGACGAGACCTCGCTCGGAGTTGGAGGAAGCCTCGTCGATAAGATCAGTTATTGTATACGAACTTCCAGAGTCTTCTCCAAACCTTCGCCGCCGTCGCCGTCTATTCCTGAGGACGCTGCGCCTCCGATCCGATGGCGGAAAGGCGAGTTGATCGGTTGCGGTGCCTTTGGCCAAGTCTACGTTGGAATGAATATCGATTCCGGAGAGCTTCTGGCGGTTAAACAGGTTTTGATTGCGGCGAGTAGTGCTTCGAAGGAGAAGGCACAGGCTCATATAAAAGAGCTAGAAGAAGAAGTTAAATTACTTAAAGACCTTTCACATCCAAACATTGTTAGATATTTGGGTACGGTCAGAGAAGAGGACACCCTAAATATTCTCTTGGAGTTTGTTCCTGGTGGATCCATATCATCGCTGTTGGGGAAGTTTGGTGCTTTCCCTGAGGCTGTAATAAGAACCTACACGAAGCAGCTACTACTTGGACTCGAGTACTTGCACAAAAATGGAATCATGCATAGAGACATTAAGGGGGCCAATATTTTGGTAGATAATAAAGGGTGCATAAAACTTGCAGACTTTGGGGCATCCAAACAGGTCGTTGAGCTGGCAACCATTTCCGGGGCCAAATCTATGAAGGGTACTCCATATTGGATGGCTCCAGAAGTTATTCTTCAGACTGGGCATAGCTTCTCTGCTGACATATGGAGTGTGGGTTGTACTGTGATTGAGATGGCCACTGGAAAGCCTCCCTGGAGTCAGCAATACCAACAAGAGGTTGCTGCTCTCTTCCATATAGGGACAACTAAGTCTCATCCACCAATCCCTGATCATCTATCGGCTGCAGCAAAAGATTTTCTGCTAAAATGTTTGCAGAAGGAACCGGTTTTGAGGTCATCAGCATCAGAACTGCTGCAGCATCCCTTTGTAACTGGTGAACATATGAATTCTCTTAGTCTGTCATCTAATGTCACGGAAAATTTTATAGCTTCACCATCATGTGCCCCAAATGATGAATCCATCCTTTGCTCTTCAACAGTAAATCCTCTGGACTCTGGAAATAAACAATTGTGGGGAATGAGCAATGATGATGACGATATGTGTGTGATTGACGACAAAGAAGAGTTCTCGCATAATGATGTTAAATACAAATCACTGATGTCAACTGATATTGAGAGTTTCAACCCAATGTCTGATCCCTCTGATGATTGGGGGTGTAAATTTGATGCAAATTCAGAACTGGAAAATCGAGAGGTCAATTTTGTCACAGATGAAAGTTACATGCCACCTGATCAGTCAGGGGATGATAAGGGGCAGCCAGATTTTTCCTTTCCAGGTGTTCCATCTCTTTCAGAGGAAGATGATGAACTCACAGAGTCAAAAATCAAAGCCTTTTTGGATGAGAAGGCTCTTGAACTGAAAAAACTACAGACACCTTTATATGAAGAGTTTTACAACAGTTTAAATACATCCTCTTCTCCCAATGTTGACAGTACAAGTGATGATACTGCTTCTCGAAAATTTTTGAAATTACCTCCAAAAAGCAGATCACCTAATCGAGTACCAATCAGTACACCATCTAAAGCCATCGATAATACTGGAAGTCCTGGAAGTAATGGCCAGTCCTCATCAACTGTTGGCCATGTAAATAACCATACTTCTCACGATATTCCAGCATCTCCCCTTAACGAATGGAAAGGAGTGATAGTTGACTCTCAGCAGCAGCCTAGTAGCCCAAGTCTAAGCTTTTCGGAGAGACAGAGAAAATGGAAAGAAGAGCTTGACCAGGAGCTCGAGAGAAAGCGAGAAATGATGCGTCAGGCTGGCATGGGCGGAAAGACATCTTCTCCAAAGGATCGAGCTATACATCGGCAGAGGGAACGAACAAGATTTGCTTCTCCTAGCAAATAA 1965 0.4438 MQDIFGSVRRSLVFRGSPESDETSLGVGGSLVDKISYCIRTSRVFSKPSPPSPSIPEDAAPPIRWRKGELIGCGAFGQVYVGMNIDSGELLAVKQVLIAASSASKEKAQAHIKELEEEVKLLKDLSHPNIVRYLGTVREEDTLNILLEFVPGGSISSLLGKFGAFPEAVIRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQQEVAALFHIGTTKSHPPIPDHLSAAAKDFLLKCLQKEPVLRSSASELLQHPFVTGEHMNSLSLSSNVTENFIASPSCAPNDESILCSSTVNPLDSGNKQLWGMSNDDDDMCVIDDKEEFSHNDVKYKSLMSTDIESFNPMSDPSDDWGCKFDANSELENREVNFVTDESYMPPDQSGDDKGQPDFSFPGVPSLSEEDDELTESKIKAFLDEKALELKKLQTPLYEEFYNSLNTSSSPNVDSTSDDTASRKFLKLPPKSRSPNRVPISTPSKAIDNTGSPGSNGQSSSTVGHVNNHTSHDIPASPLNEWKGVIVDSQQQPSSPSLSFSERQRKWKEELDQELERKREMMRQAGMGGKTSSPKDRAIHRQRERTRFASPSK 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00816 654 CDD STKc_MAPKKK 64 328 - -
Viun2g00816 654 MobiDBLite consensus disorder prediction 635 654 - -
Viun2g00816 654 SMART serkin_6 65 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g00816 654 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 53 336 - -
Viun2g00816 654 MobiDBLite consensus disorder prediction 603 625 - -
Viun2g00816 654 Pfam Protein kinase domain 66 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g00816 654 MobiDBLite consensus disorder prediction 505 654 - -
Viun2g00816 654 MobiDBLite consensus disorder prediction 585 602 - -
Viun2g00816 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Viun2g00816 654 MobiDBLite consensus disorder prediction 443 473 - -
Viun2g00816 654 MobiDBLite consensus disorder prediction 536 576 - -
Viun2g00816 654 ProSiteProfiles Protein kinase domain profile. 65 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g00816 654 Gene3D Transferase(Phosphotransferase) domain 1 64 357 - -
Viun2g00816 654 MobiDBLite consensus disorder prediction 505 520 - -
Viun2g00816 654 Coils Coil 605 625 - -
Viun2g00816 654 FunFam Serine/threonine-protein kinase STE11 61 155 - -
Viun2g00816 654 Coils Coil 98 125 - -
Viun2g00816 654 ProSitePatterns Protein kinases ATP-binding region signature. 71 94 IPR017441 GO:0005524
Viun2g00816 654 FunFam Mitogen-activated protein kinase kinase kinase 2 64 357 - -
Viun2g00816 654 SUPERFAMILY Protein kinase-like (PK-like) 64 329 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00816 Viun-Chr2 18820786 18826730 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00816 1 654 MAP Kinase Kinase Kinase AT1G54960 57.143 0.0 692
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Viun2g00816 Pkinase 8.5e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00816 K20606 - gmx:100807537 1145.57