Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00781 ATGTCTGCAAACAAAGCGTGCAATATAATGCTGCAGCAAATTGTACTACTACAAGACCAAGTGGTTGGTATCCCATGCAAGAGGCTGTTAGACACTGTGACAGTGAAGTGTGGCCACTGCAGCAACCTCTCCTTTCTGAGCACCAGACCCCCAAGTTCTCAAAACCAAAGCATTGATCACACCCTCAGTCTCCAGGGGTTTTACAGTAATGCCAAAAAGGGACAAGCATCGTCTTCATCTTCCTCACCAACCACATCCAACGAGTCAGTGTCCCCAAAAGCAGCATCATTTGTTGTGAAACCACCTGAGAAAAAGCACCGTCTCCCATCTGCATACAATCGTTTCATGAAAGAGGAGATACAGCGCATCAAAGCAGCGAACCCTGAGATCCCACATCGAGAAGCTTTCAGCGCTGCTGCGAAAAATTGGGCAAGGTTCATTCCAAATTCACCAACTAGTTCAGTTTCTGCAAACAAAGTGAATGCAGATTGA 492 0.4634 MSANKACNIMLQQIVLLQDQVVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPSSQNQSIDHTLSLQGFYSNAKKGQASSSSSSPTTSNESVSPKAASFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARFIPNSPTSSVSANKVNAD 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00781 163 CDD HMG-box_SF 107 143 - -
Viun2g00781 163 SUPERFAMILY HMG-box 90 144 IPR036910 -
Viun2g00781 163 PANTHER PROTEIN YABBY 6-RELATED 17 153 IPR006780 GO:0007275
Viun2g00781 163 FunFam Protein CRABS CLAW 79 150 - -
Viun2g00781 163 MobiDBLite consensus disorder prediction 72 110 - -
Viun2g00781 163 Gene3D High mobility group box domain 84 149 IPR036910 -
Viun2g00781 163 MobiDBLite consensus disorder prediction 72 93 - -
Viun2g00781 163 Pfam YABBY protein 21 146 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00781 Viun-Chr2 18314660 18317239 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00781 7 158 C2C2-YABBY Transcription Factor Family AT1G69180 62.092 1.20e-54 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Viun2g00781 YABBY 1.4e-43 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00781 K25796 - gmx:100819079 274.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g00781 2 18314660 18317239 Viun2g00781 2 18314660 18317239 ECH