Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00778 ATGGAATCTTGGAGTTATGTCCCTGAAGAGAAAGGCTATTTGTTTTCTGATGAAATGGATTTTTCACTTGATGCTTTTATGAGAAGTCGAAGAACATTGGTTGAATGGGACAACAAATCCAACTTTGAGAGAGATGGATTTAATTCAGACAGAGAGGTAGTTAAAAGCATGGAATTTGTGGACTTGGGATTCCCTGACTTGTTGCAGAAGTCTTTTCATGGTAGCCAGCCTCTAGAGACATCAAGCTATGAACTAGATAGTAATTCTAGTAGAAGAGGGAATTCCTCCACACATGTCATTGCTTTGGATTCTACTATGGGGGAAGAAGAATCTGATTCAAAGCATTTAAGTTCTCTAGTTGAAACTAAGACTCATGATTCTTCACTGATTGATCTGAAGCTTGGGAGATTAGCAGATTGTAAAGGTGCAAGCAGTGATAAAGTTGCAAAAGAAGGGTTTACTTTGACATCTATAAATCCAACTACGCTTTCAAAGAGAGCTCGCACTTCCAGCTTATCTGCACAGGCTCCTGTATGTCAAGTCTATGGTTGTAACATGGATCTTAGTTCCTCAAAAGATTACCACAAAAGGCATAAAGTTTGTGATGCTCACTCCAAAACGGCCAAAGTTATTGTAAATGGCCTTGAACAAAGGTTTTGTCAGCAGTGCAGCAGGTTCCATTTGCTAGCCGAGTTCGACGATGGCAAGCGCAGTTGTCGCAGGCGCCTAGCAGGACACAATGAACGCCGGAGGAAACCTCAATTTGATTACATGACTGGTAAACAGCACAAGATTCTTCAATCATATCAAGGTACCAAATATCTTGGGTCCTCATTGCAGAACAAACCCCAGTTTCCCTTTCAAAACATATTTCAAAGTGGCATCCTTTTCCCTGGAAAACAGTCTCAGAACTCTCAGAGTGGACGCATCAAACTGGAAGAAGATTCCTTGTACAGTTCCCAACTTGCTGCACCCGTCACACTTGGTCAGGAATTATCAAGCTGTGCTCTCTCTCTTCTGTCAGATCAGTCACAGTATCCCTCACGCCATGCAGCAGGAAATCCATTAGCCGGTGCCCGAATCCTTCACGGCATTCACATTCAAGATAGAGATGACCTAGTTTCCGAAACATCTTTGAGGATAACAAGTTCTGCAGATAAATATGCAGCAAACGAGTCCTTTCCATGCAACACAGCCTCTAAGGAAGTTATCAAGAATCAAACCGCACCATCATTCTCTAATGCAGGCCATGCTCTTCAAGACCATCATGGAGATGCTATTTGCCAACCATCAGATCTGTTCGACATCAAACACAGGCTTTCATCGGAACATGGAGCTACAGTTGATCTGTTCCAGTTGTCCTCACATCTTCAGAGGGTGGAGCAGCAAAGAAATTCTGTTTTGGTGAAGTGGGAAAATGAAGACTACTGTTTCCCAACTGTATGA 1446 0.4253 MESWSYVPEEKGYLFSDEMDFSLDAFMRSRRTLVEWDNKSNFERDGFNSDREVVKSMEFVDLGFPDLLQKSFHGSQPLETSSYELDSNSSRRGNSSTHVIALDSTMGEEESDSKHLSSLVETKTHDSSLIDLKLGRLADCKGASSDKVAKEGFTLTSINPTTLSKRARTSSLSAQAPVCQVYGCNMDLSSSKDYHKRHKVCDAHSKTAKVIVNGLEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKPQFDYMTGKQHKILQSYQGTKYLGSSLQNKPQFPFQNIFQSGILFPGKQSQNSQSGRIKLEEDSLYSSQLAAPVTLGQELSSCALSLLSDQSQYPSRHAAGNPLAGARILHGIHIQDRDDLVSETSLRITSSADKYAANESFPCNTASKEVIKNQTAPSFSNAGHALQDHHGDAICQPSDLFDIKHRLSSEHGATVDLFQLSSHLQRVEQQRNSVLVKWENEDYCFPTV 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00778 481 FunFam Squamosa promoter-binding-like protein 14 170 240 - -
Viun2g00778 481 ProSiteProfiles Zinc finger SBP-type profile. 176 253 IPR004333 GO:0003677
Viun2g00778 481 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 99 466 IPR044817 GO:0003677
Viun2g00778 481 SUPERFAMILY SBT domain 177 258 IPR036893 GO:0003677|GO:0005634
Viun2g00778 481 Pfam SBP domain 179 252 IPR004333 GO:0003677
Viun2g00778 481 Gene3D - 169 240 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00778 Viun-Chr2 18217246 18222398 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00778 1 479 SBP-box Gene Family AT1G69170 35.178 6.95e-66 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Viun2g00778 SBP 1.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00778 - - vum:124825483 932.939